Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CF557_RS03015 Genome accession   NZ_CP114281
Coordinates   613855..614808 (+) Length   317 a.a.
NCBI ID   WP_179256244.1    Uniprot ID   -
Organism   Gallibacterium anatis strain ESV200     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 608855..619808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF557_RS02990 (CF557_02990) - 609342..610283 (+) 942 WP_013745084.1 ABC transporter ATP-binding protein -
  CF557_RS02995 (CF557_02995) - 610284..611054 (+) 771 WP_039091949.1 ABC transporter permease -
  CF557_RS03000 (CF557_03000) modB 611080..611796 (+) 717 WP_065232329.1 molybdate ABC transporter permease subunit -
  CF557_RS03005 (CF557_03005) modC 611789..612844 (+) 1056 WP_094873547.1 molybdenum ABC transporter ATP-binding protein -
  CF557_RS03010 (CF557_03010) modA 612889..613647 (+) 759 WP_039094796.1 molybdate ABC transporter substrate-binding protein -
  CF557_RS03015 (CF557_03015) ceuB 613855..614808 (+) 954 WP_179256244.1 ABC transporter permease Machinery gene
  CF557_RS03020 (CF557_03020) - 614801..615766 (+) 966 WP_094873551.1 iron chelate uptake ABC transporter family permease subunit -
  CF557_RS03025 (CF557_03025) - 615757..616518 (+) 762 WP_094873553.1 ABC transporter ATP-binding protein -
  CF557_RS03030 (CF557_03030) - 616549..617457 (+) 909 WP_039086348.1 siderophore ABC transporter substrate-binding protein -
  CF557_RS03035 (CF557_03035) - 617572..619494 (+) 1923 WP_094873555.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34714.76 Da        Isoelectric Point: 8.9706

>NTDB_id=765351 CF557_RS03015 WP_179256244.1 613855..614808(+) (ceuB) [Gallibacterium anatis strain ESV200]
MIQRRYLLLLLAVLSITSLLIGVSSVSISGLLQFDAEQWQILLISRIPRLVSILIAGAGLSICGLIMQQLSRNRFVSPTT
AGTMDCARLGVLLAILCFPDASMLLKSAIAIIAAFAGSLLFMTLLSKLKFTDVIFVPLVGIMFGNIISSMTAFIAYQQDL
LQNLSAWLQGDFSLIMSGRYEMLYISIPTLLFAYIYAQRFSIVGMGEEFATNLGLNYKQVLYLGLAIVSIVSAIVIVTVG
VIPFLGLIIPNIVALYLGDNLRNTLSYTALLGAIFVLFCDILGRIVIYPYEISINAVVGVFGSAIFLYLLFKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=765351 CF557_RS03015 WP_179256244.1 613855..614808(+) (ceuB) [Gallibacterium anatis strain ESV200]
ATGATTCAACGACGATATCTGTTGTTATTATTGGCGGTATTATCAATTACTTCTTTATTAATCGGTGTGAGTTCCGTTTC
TATCAGCGGTTTACTACAGTTTGATGCCGAACAGTGGCAAATTTTATTGATCAGCCGTATTCCTCGTTTAGTGAGTATTT
TGATTGCCGGTGCCGGTTTAAGTATTTGTGGCTTAATTATGCAACAACTTAGTCGTAATCGCTTTGTTTCACCAACCACC
GCCGGAACGATGGATTGTGCGCGATTAGGTGTGTTATTAGCTATTCTTTGCTTTCCTGATGCTTCAATGTTATTAAAATC
GGCTATTGCAATTATTGCCGCATTTGCCGGCTCATTATTATTTATGACTTTATTGTCAAAACTAAAATTTACCGATGTTA
TTTTTGTGCCGCTAGTTGGCATTATGTTTGGCAATATTATTAGTTCTATGACCGCTTTTATCGCCTATCAACAAGATTTA
TTACAAAATTTATCTGCTTGGTTGCAAGGTGATTTTTCGTTAATTATGAGTGGACGCTATGAGATGCTTTATATCAGCAT
CCCAACATTATTATTTGCATATATTTATGCACAACGTTTTTCTATTGTCGGGATGGGAGAAGAATTTGCCACCAACCTAG
GATTAAATTATAAGCAGGTACTTTATTTAGGATTAGCCATTGTTTCGATTGTGTCCGCCATTGTTATTGTTACCGTAGGC
GTTATTCCTTTTTTAGGATTAATTATCCCAAATATTGTCGCTTTATATTTAGGAGATAATTTACGTAATACTTTGTCGTA
TACAGCATTATTAGGTGCTATTTTTGTATTATTTTGCGATATTCTTGGACGCATTGTGATTTATCCTTATGAAATTTCGA
TTAATGCCGTAGTTGGCGTTTTCGGTAGTGCTATTTTCCTCTATTTATTATTTAAAAGGTATCGTAATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.398

97.476

0.521