Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   O2K97_RS06380 Genome accession   NZ_CP114278
Coordinates   1282745..1283242 (+) Length   165 a.a.
NCBI ID   WP_017504124.1    Uniprot ID   A0A2X1BAH6
Organism   Brevundimonas vesicularis strain Br4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1277745..1288242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2K97_RS06365 - 1278704..1281403 (+) 2700 WP_269220899.1 transcriptional regulator -
  O2K97_RS06370 - 1281485..1282156 (+) 672 WP_269220900.1 hypothetical protein -
  O2K97_RS06375 - 1282156..1282581 (+) 426 WP_269220901.1 hypothetical protein -
  O2K97_RS06380 ssb 1282745..1283242 (+) 498 WP_017504124.1 single-stranded DNA-binding protein Machinery gene
  O2K97_RS06385 - 1283253..1283708 (+) 456 WP_269220902.1 thiol-disulfide oxidoreductase DCC family protein -
  O2K97_RS06390 - 1283717..1284751 (+) 1035 WP_269220903.1 NAD(P)H-binding protein -
  O2K97_RS06395 - 1284809..1285006 (+) 198 WP_419466092.1 DoxX-like family protein -
  O2K97_RS06400 - 1285003..1285473 (+) 471 WP_199060328.1 DUF2269 family protein -
  O2K97_RS06405 - 1285537..1286475 (+) 939 WP_199060327.1 DMT family transporter -
  O2K97_RS06410 - 1286505..1287038 (+) 534 WP_269220904.1 DUF1003 domain-containing protein -
  O2K97_RS06415 - 1287078..1287653 (-) 576 WP_269220905.1 superoxide dismutase family protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17815.66 Da        Isoelectric Point: 5.9696

>NTDB_id=765326 O2K97_RS06380 WP_017504124.1 1282745..1283242(+) (ssb) [Brevundimonas vesicularis strain Br4]
MAGSVNKVILVGNLGRDPEIRSMPNGDRIANLSIATSETWRDKSSGERKEKTEWHRVVIFNDNIVKVVENYVKKGSTVYI
EGALQTRKWTDQQGVEKYSTEIVVSRFKGELTMLGGRSEGGSSGGGYGGGGGRGDDDYSSGFSTGGANKPSGPKESYDLN
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=765326 O2K97_RS06380 WP_017504124.1 1282745..1283242(+) (ssb) [Brevundimonas vesicularis strain Br4]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAATCTGGGGCGCGACCCCGAAATCCGCTCCATGCCCAATGGCGA
CCGGATCGCCAACCTGTCGATCGCCACCTCGGAAACCTGGCGCGACAAGTCCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGGGTCGTCATCTTCAACGACAACATCGTCAAGGTGGTCGAGAACTATGTGAAGAAGGGCTCGACCGTCTACATC
GAGGGCGCGCTCCAGACCCGCAAATGGACTGACCAGCAGGGCGTCGAGAAATATTCGACCGAGATCGTGGTCAGCCGCTT
CAAGGGTGAACTCACCATGCTGGGCGGCCGTTCGGAAGGCGGCTCGTCAGGCGGTGGTTACGGCGGCGGCGGTGGTCGCG
GCGATGACGACTACTCCTCGGGCTTCTCCACCGGCGGCGCCAACAAACCGAGCGGCCCCAAGGAAAGCTACGACCTGAAC
GACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2X1BAH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.561

100

0.533
  ssb Vibrio cholerae strain A1552

48

100

0.509
  ssb Neisseria meningitidis MC58

40

100

0.436
  ssb Neisseria gonorrhoeae MS11

40

100

0.436