Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   O1449_RS06960 Genome accession   NZ_CP114264
Coordinates   1494849..1495235 (+) Length   128 a.a.
NCBI ID   WP_004662377.1    Uniprot ID   A0A9E9L702
Organism   Acinetobacter sp. TR3     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1489849..1500235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS06930 (O1449_06940) kdsB 1490430..1491191 (+) 762 WP_269239544.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  O1449_RS06935 (O1449_06945) - 1491194..1492177 (+) 984 WP_269239545.1 DNA polymerase III subunit delta' -
  O1449_RS06940 (O1449_06950) - 1492516..1492860 (+) 345 WP_004662384.1 PilZ domain-containing protein -
  O1449_RS06945 (O1449_06955) - 1492877..1493650 (+) 774 WP_269239546.1 TatD family hydrolase -
  O1449_RS06950 (O1449_06960) - 1493691..1494302 (+) 612 WP_269239677.1 TetR/AcrR family transcriptional regulator -
  O1449_RS06955 (O1449_06965) - 1494311..1494862 (+) 552 WP_269239547.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  O1449_RS06960 (O1449_06970) xcpV 1494849..1495235 (+) 387 WP_004662377.1 type II secretion system minor pseudopilin GspI Machinery gene
  O1449_RS06965 (O1449_06975) xcpW 1495235..1495864 (+) 630 WP_269239678.1 type II secretion system minor pseudopilin GspJ Machinery gene
  O1449_RS06970 (O1449_06980) gspK 1495861..1496817 (+) 957 WP_046738845.1 type II secretion system minor pseudopilin GspK -
  O1449_RS06975 (O1449_06985) - 1496928..1497524 (+) 597 WP_046738846.1 6-carboxytetrahydropterin synthase -
  O1449_RS06980 (O1449_06990) ung 1497570..1498283 (+) 714 WP_046738869.1 uracil-DNA glycosylase -
  O1449_RS06985 (O1449_06995) - 1498280..1499404 (+) 1125 WP_269239679.1 enoyl-CoA hydratase/isomerase family protein -
  O1449_RS06990 (O1449_07000) tadA 1499410..1499934 (+) 525 WP_269239548.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14253.70 Da        Isoelectric Point: 10.0997

>NTDB_id=765295 O1449_RS06960 WP_004662377.1 1494849..1495235(+) (xcpV) [Acinetobacter sp. TR3]
MKKIKAFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSSAILRTKAQFVAMNEVAMMEMNQEWLDGTQSKQVTSQGETWQ
IDKKAQATISPKIQRIELQVSLFNTEQGKVEAGITNMVFFNYPAKAKT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=765295 O1449_RS06960 WP_004662377.1 1494849..1495235(+) (xcpV) [Acinetobacter sp. TR3]
ATGAAGAAGATTAAAGCATTTACCCTATTGGAAGTGATGGTTGCATTAGCAATATTTGCTGTCGCTGCAATTGCATTAAC
AAAAATTGCCATGCAATATACACAATCTACATCGAGTGCGATTTTGCGAACTAAAGCACAGTTCGTTGCAATGAATGAGG
TTGCAATGATGGAAATGAATCAAGAATGGTTAGATGGAACGCAATCGAAACAGGTGACTTCTCAAGGTGAGACTTGGCAG
ATTGATAAAAAAGCACAGGCTACAATTAGTCCAAAAATACAACGTATCGAATTACAAGTAAGTTTATTTAATACTGAGCA
AGGTAAAGTTGAAGCGGGCATCACCAATATGGTGTTTTTTAATTATCCAGCAAAAGCTAAAACATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.4

97.656

0.805