Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   O1449_RS01735 Genome accession   NZ_CP114264
Coordinates   368256..370481 (-) Length   741 a.a.
NCBI ID   WP_269239654.1    Uniprot ID   A0A9E9NPW6
Organism   Acinetobacter sp. TR3     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 363256..375481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS01715 (O1449_01715) - 363511..364455 (-) 945 WP_269238988.1 DnaJ C-terminal domain-containing protein -
  O1449_RS01720 (O1449_01720) - 364597..365208 (-) 612 WP_269238989.1 LysE family translocator -
  O1449_RS01725 (O1449_01725) - 365322..366197 (-) 876 WP_004659214.1 Hsp33 family molecular chaperone HslO -
  O1449_RS01730 (O1449_01730) - 366317..368134 (-) 1818 WP_269238990.1 cation:proton antiporter -
  O1449_RS01735 (O1449_01735) priA 368256..370481 (-) 2226 WP_269239654.1 primosomal protein N' Machinery gene
  O1449_RS01740 (O1449_01740) gspF 370643..371848 (+) 1206 WP_269228955.1 type II secretion system inner membrane protein GspF -
  O1449_RS01745 (O1449_01745) gspG 371866..372441 (+) 576 WP_269238991.1 type II secretion system major pseudopilin GspG -
  O1449_RS01750 (O1449_01750) - 372706..373050 (+) 345 WP_269238993.1 hypothetical protein -
  O1449_RS01755 (O1449_01755) - 373102..373362 (-) 261 WP_269238994.1 DUF2798 domain-containing protein -
  O1449_RS01760 (O1449_01760) - 373607..373804 (+) 198 Protein_332 tRNA-binding protein -
  O1449_RS01765 (O1449_01765) lnt 373788..375347 (-) 1560 WP_269238996.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84185.22 Da        Isoelectric Point: 8.7480

>NTDB_id=765289 O1449_RS01735 WP_269239654.1 368256..370481(-) (priA) [Acinetobacter sp. TR3]
MPSQNSNAILYRIRVAIPVYVYDTFDYTVSAEQYDQAQVGARVAISFGRQNLIGIITEKVDPNDLFTGQFKLKTITELLD
QESILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKIIPYDDPNALLKRSQKQYDAYQVLKLHPHG
STENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNKDQKKAIQHILKAQHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQILVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSAIYTPL
PHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLQGCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVLPKMYV
VDLKVAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHHCGTIN
RLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADRKIAML
PPYRYAVLVRVESKDRDYSLQFLADIAQQLKVMASDIVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQWWQQV
VHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=765289 O1449_RS01735 WP_269239654.1 368256..370481(-) (priA) [Acinetobacter sp. TR3]
ATGCCTAGCCAAAATTCTAACGCTATTTTGTACCGTATTCGAGTTGCAATACCCGTTTATGTGTATGACACGTTTGACTA
TACGGTCAGTGCTGAGCAATACGATCAAGCACAGGTTGGCGCACGTGTTGCGATTTCATTTGGACGGCAAAATCTGATTG
GAATCATTACTGAAAAAGTTGATCCTAATGACCTATTCACAGGGCAATTCAAACTTAAGACCATCACAGAATTACTCGAT
CAGGAATCAATTCTAGATCAACAAGTTTTAACTTTGTTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGAGGT
GATGCAAAGCGCTCTGCCTACTTTATTAAGACAAGGGCGCGCCTTAGACATTCTGTTTCATTTATGGAAAATCATCCCAT
ACGATGACCCAAATGCCTTATTAAAACGCTCTCAAAAACAATATGATGCCTATCAGGTTTTAAAGCTTCATCCACATGGT
TCTACGGAGAATGTGCTCAATCTCAGTGGTGTAGAAACCTCAACTTTAAAGGCATTAGAAAAAAAGGGCTTGGTTGAATG
TTGTCTAGAACCGCATGATTTCACCCCAACGCCTGTGCAGCTGGCTCAAGTGCCTTTGACACCAAACAAAGATCAAAAGA
AAGCCATTCAACATATCCTCAAAGCACAGCATCACTATCAAGCATTTTTACTCGATGGTTTGACTGGTAGTGGCAAAACT
GAAGTCTATTTGCAAGTCATGCATGAGGTGCTAAAACAAGGCAAACAAATATTGGTACTGGTACCTGAAATTGGCCTAAC
CCCACAAACGGTCGCCCGTTTTAAATCACGGTTTCATTGCGATGTGGCTTTACTGCACTCAGGCTTAAATGACTCAAAAC
GTTTACAAGCATGGCAACATGCACAAACGGGCAAAGCTTCCATTATTATTGGCACACGTTCAGCAATCTATACCCCACTG
CCGCATTTGGGCTTAATCATTCTAGATGAGGAACATGATCTTTCGTATAAGCAGCAAGAAGGTTTCCGTTACCATACCCG
TGATGTGGCGTTGTATCGTGGTCACTTGCAAGGCTGTCCTGTCATTCTCGGTTCAGCCACCCCAAGTATCGACAGTTATC
ATTTGGTGGAATCAGGTAAGTTGCACTTGCTTGAACTAAATCAACGGGCGGGCGTGGCGGTACTGCCGAAAATGTATGTG
GTGGATTTAAAAGTCGCAAAAAAGAAGCATGGTCTCAGCCAAACCCTGATCGAACAGATCAAACATACTTTAGAGCGTAA
AGAACAGGTACTGATCTTTTTAAATCGACGTGGTTATGCACCGATCCTGATGTGTGAAAGCTGTGGTTGGCAAGCCAACT
GTCCACATTGTGATGCGCATTTTACTTTGCATTCACAGCCCTACCATTATTTGCATTGTCATCATTGCGGCACAATCAAT
CGTCTGCCTGATCATTGTCCTGCATGTCAGAAACAAAGCTTAAAAACTATTGGGGCAGGAACAGCAAAACTTGAAGAACA
TTTACAGGAGCTGTTCCCACATCATGAAGTGATTCGGGTCGATCGTGACAGCACCAGTCGAGTCGGTAGCTGGCAAAAAA
TCTATGATCGCATTCAGCAAAATAAACCGAGCATTTTGTTGGGCACACAAATGCTGGCAAAAGGTCATCATTTTCCGCAT
GTTACCCTTGTTGCGATTTTAGATATTGATGCAGGACTGCTCAGTGTTGATCCACGTGCACCTGAGCGAACCGCACAGCT
GATTGTACAGGTCGCTGGCCGTGCTGGTCGTGGTGAGCATAAAGGCAGTGTTTATTTGCAAAGTTTGCGTCCAGATCATC
CGATGCTGACCACATTGATTGAACATGACTACCGCACTGTCGCCAAACAGATGCTGGCTGACCGCAAAATCGCGATGTTA
CCGCCTTATCGTTATGCAGTATTGGTTCGGGTTGAATCTAAAGACAGAGATTATAGCCTACAATTCTTAGCAGATATTGC
ACAACAATTGAAAGTAATGGCAAGTGATATCGTGGATATTTGGGGACCCATTCCCGCACCGATGGAACGTAAAGCTGGTC
GTTATCGCGCGCATATGGTGATTTTATCAACTGATCGCGCCAAGCTGCACTTTTATTTACGTCAATGGTGGCAACAAGTG
GTACATTTACCACGTCAGCATTTGCTCAGACTCTCGATCGATGTTGATCCACAAGAGTTTAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.313

99.19

0.816