Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   O1449_RS01225 Genome accession   NZ_CP114264
Coordinates   253505..253831 (+) Length   108 a.a.
NCBI ID   WP_018679168.1    Uniprot ID   V2V4N2
Organism   Acinetobacter sp. TR3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 248505..258831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1449_RS01200 (O1449_01200) hemC 248944..249861 (+) 918 WP_269238934.1 hydroxymethylbilane synthase -
  O1449_RS01205 (O1449_01205) - 249861..250637 (+) 777 WP_269238935.1 uroporphyrinogen-III synthase -
  O1449_RS01210 (O1449_01210) - 250634..251461 (+) 828 WP_269238936.1 hypothetical protein -
  O1449_RS01215 (O1449_01215) - 251469..252662 (+) 1194 WP_269229028.1 heme biosynthesis protein HemY -
  O1449_RS01220 (O1449_01220) - 252670..253107 (+) 438 WP_269229027.1 thioesterase family protein -
  O1449_RS01225 (O1449_01225) hns 253505..253831 (+) 327 WP_018679168.1 H-NS histone family protein Regulator
  O1449_RS01230 (O1449_01230) gspN 254008..254751 (+) 744 WP_241306802.1 type II secretion system protein N -
  O1449_RS01235 (O1449_01235) - 254751..255584 (+) 834 WP_269229026.1 type II secretion system protein N -
  O1449_RS01240 (O1449_01240) gspD 255626..257884 (+) 2259 WP_269238937.1 type II secretion system secretin GspD -
  O1449_RS01245 (O1449_01245) - 257949..258566 (+) 618 WP_269229024.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.13 Da        Isoelectric Point: 5.0355

>NTDB_id=765285 O1449_RS01225 WP_018679168.1 253505..253831(+) (hns) [Acinetobacter sp. TR3]
MKPDISDLSVEDLKRLQVEAEALILSKKDQAIEDAYNQIIAIAEAVGFSVEELLELGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=765285 O1449_RS01225 WP_018679168.1 253505..253831(+) (hns) [Acinetobacter sp. TR3]
ATGAAACCAGATATTAGTGATTTATCTGTGGAAGATTTAAAACGTTTACAGGTAGAAGCAGAAGCTTTAATTTTAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAGCCGTTGGTTTTAGCGTTGAAGAATTAT
TAGAGTTAGGTGAGCAAAAGCGTAAGAAAACAACGCGCAAAGCAGTAGAACCACGCTACCGTAATAAAAATAATACAGAA
GAAACTTGGACTGGTCGTGGTAAACAGCCACGTTGGTTAGTTGCTGAATTAGAAAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2V4N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889