Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   O1450_RS14770 Genome accession   NZ_CP114256
Coordinates   3046035..3046361 (-) Length   108 a.a.
NCBI ID   WP_018679168.1    Uniprot ID   V2V4N2
Organism   Acinetobacter sp. TR11     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3041035..3051361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS14750 (O1450_14750) - 3041300..3041917 (-) 618 WP_269229024.1 FHA domain-containing protein -
  O1450_RS14755 (O1450_14755) gspD 3041982..3044240 (-) 2259 WP_269229025.1 type II secretion system secretin GspD -
  O1450_RS14760 (O1450_14760) - 3044282..3045115 (-) 834 WP_269229026.1 type II secretion system protein N -
  O1450_RS14765 (O1450_14765) gspN 3045115..3045858 (-) 744 WP_241306802.1 type II secretion system protein N -
  O1450_RS14770 (O1450_14770) hns 3046035..3046361 (-) 327 WP_018679168.1 H-NS histone family protein Regulator
  O1450_RS14775 (O1450_14775) - 3046759..3047196 (-) 438 WP_269229027.1 thioesterase family protein -
  O1450_RS14780 (O1450_14780) - 3047204..3048397 (-) 1194 WP_269229028.1 heme biosynthesis protein HemY -
  O1450_RS14785 (O1450_14785) - 3048405..3049232 (-) 828 WP_269229029.1 hypothetical protein -
  O1450_RS14790 (O1450_14790) - 3049229..3050005 (-) 777 WP_269229030.1 uroporphyrinogen-III synthase -
  O1450_RS14795 (O1450_14795) hemC 3050005..3050922 (-) 918 WP_269229031.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12384.13 Da        Isoelectric Point: 5.0355

>NTDB_id=765267 O1450_RS14770 WP_018679168.1 3046035..3046361(-) (hns) [Acinetobacter sp. TR11]
MKPDISDLSVEDLKRLQVEAEALILSKKDQAIEDAYNQIIAIAEAVGFSVEELLELGEQKRKKTTRKAVEPRYRNKNNTE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=765267 O1450_RS14770 WP_018679168.1 3046035..3046361(-) (hns) [Acinetobacter sp. TR11]
ATGAAACCAGATATTAGTGATTTATCTGTGGAAGATTTAAAACGTTTACAGGTAGAAGCAGAAGCTTTAATTTTAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATTGCGATTGCTGAAGCCGTTGGTTTTAGCGTTGAAGAATTAT
TAGAGTTAGGTGAGCAAAAGCGTAAGAAAACTACACGCAAAGCAGTCGAGCCACGCTATCGTAATAAAAACAACACTGAA
GAAACTTGGACTGGTCGTGGTAAGCAACCACGTTGGTTAGTTGCTGAATTAGAGAAAGGCGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V2V4N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889