Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   O1450_RS14265 Genome accession   NZ_CP114256
Coordinates   2931155..2933395 (+) Length   746 a.a.
NCBI ID   WP_269230477.1    Uniprot ID   -
Organism   Acinetobacter sp. TR11     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2926155..2938395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS14240 (O1450_14240) lnt 2926530..2928089 (+) 1560 WP_269228951.1 apolipoprotein N-acyltransferase -
  O1450_RS14245 (O1450_14245) - 2928188..2928574 (-) 387 WP_269228952.1 hypothetical protein -
  O1450_RS14250 (O1450_14250) - 2928602..2928946 (-) 345 WP_269228953.1 hypothetical protein -
  O1450_RS14255 (O1450_14255) gspG 2929210..2929794 (-) 585 WP_269228954.1 type II secretion system major pseudopilin GspG -
  O1450_RS14260 (O1450_14260) gspF 2929803..2931008 (-) 1206 WP_269228955.1 type II secretion system inner membrane protein GspF -
  O1450_RS14265 (O1450_14265) priA 2931155..2933395 (+) 2241 WP_269230477.1 primosomal protein N' Machinery gene
  O1450_RS14270 (O1450_14270) - 2933517..2935334 (+) 1818 WP_269228956.1 cation:proton antiporter -
  O1450_RS14275 (O1450_14275) - 2935454..2936329 (+) 876 WP_269228957.1 Hsp33 family molecular chaperone HslO -
  O1450_RS14280 (O1450_14280) - 2936443..2937054 (+) 612 WP_269228958.1 LysE family translocator -
  O1450_RS14285 (O1450_14285) - 2937196..2938140 (+) 945 WP_269228959.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84731.74 Da        Isoelectric Point: 8.6493

>NTDB_id=765263 O1450_RS14265 WP_269230477.1 2931155..2933395(+) (priA) [Acinetobacter sp. TR11]
MNEAYMPSQNSNAILYRIRVAIPVYVYDTFDYTVSAEQYDQAQVGARVAISFGRQNLIGIITEKVDPNDLFTGQFKLKAI
TELLDQESILDQQVLTLLTWSAQYYQFPIGEVMQSALPSLLRQGRALDILFHLWKIIPYDDPNALLKRSQKQYDAYQVLK
LHPHGSTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNKDQKKAIQQILKAQHHYQAFLLDGLT
GSGKTEVYLQVMHEVLKQGKQILVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSA
IYTPLPHLGLIILDEEHDLSYKQQEGFRYHTRDVALYRGHLQGCPVILGSATPSIDSYHLVESGKLHLVELNQRAGIAVL
PKMYVVDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHH
CGTINRLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKG
HHFPHVTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADR
KIALLPPYRYAVLVRVESKDRDYSQQFLADIAQQLRVIAGDIVDIWGPIPAPMERKAGRYRAHMVILSTDRAKLHFYLRQ
WWQQVVHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=765263 O1450_RS14265 WP_269230477.1 2931155..2933395(+) (priA) [Acinetobacter sp. TR11]
ATGAATGAAGCCTATATGCCTAGCCAAAATTCTAACGCTATTTTGTACCGTATTCGAGTTGCAATACCCGTTTATGTGTA
TGACACGTTTGACTATACGGTCAGTGCTGAGCAATACGATCAAGCACAGGTTGGCGCACGTGTTGCGATTTCATTTGGAC
GGCAAAATCTGATTGGAATCATTACTGAGAAAGTTGATCCCAATGACCTATTCACAGGGCAATTCAAACTTAAGGCCATC
ACAGAATTACTCGATCAGGAATCAATTCTAGATCAACAAGTTTTAACTTTGTTGACATGGTCAGCCCAATATTACCAATT
CCCGATTGGTGAAGTGATGCAAAGTGCCCTGCCCAGCTTATTAAGACAAGGGCGCGCCTTAGACATTCTGTTTCATTTAT
GGAAAATCATCCCATACGATGACCCAAATGCCTTATTAAAACGCTCTCAAAAACAATATGATGCCTATCAGGTTTTAAAG
CTTCATCCACATGGTTCTACGGAGAATGTGCTCAATCTCAGTGGTGTAGAAACCTCAACTTTAAAGGCATTAGAAAAAAA
GGGCTTGGTTGAATGTTGTCTAGAACCGCATGATTTCACCCCAACGCCTGTGCAGCTGGCTCAAGTGCCTTTGACACCAA
ACAAAGATCAAAAGAAAGCCATTCAACAGATCCTCAAAGCACAGCATCACTATCAAGCATTTTTACTCGATGGTTTGACT
GGCAGTGGCAAAACTGAAGTCTATTTGCAAGTCATGCATGAGGTGCTAAAACAAGGCAAACAAATATTGGTACTGGTACC
TGAAATTGGCCTAACCCCACAAACGGTCGCCCGTTTTAAATCACGGTTTCATTGCGATGTGGCTTTACTGCACTCAGGCT
TAAATGACTCAAAACGTTTACAAGCATGGCAACATGCACAAACGGGCAAAGCTTCCATTATTATTGGCACACGTTCAGCA
ATCTATACCCCACTGCCGCATTTGGGCTTAATCATTCTAGATGAGGAACATGATCTTTCGTATAAGCAGCAAGAAGGTTT
CCGTTACCATACCCGTGATGTGGCGTTGTATCGTGGTCACTTGCAAGGCTGTCCCGTCATTCTCGGTTCAGCCACCCCAA
GTATCGACAGTTATCATTTGGTAGAATCGGGCAAGTTACATCTAGTTGAGTTGAATCAGCGTGCGGGCATCGCTGTACTG
CCGAAAATGTATGTGGTGGATTTAAAAATCGCAAAAAAGAAGCACGGACTCAGCCAAACACTCATCGAACAAATCAAGCA
TACGTTAGAACGTAAAGAACAAGTACTGATCTTTTTAAATCGACGCGGTTATGCGCCGATCCTGATGTGTGAAAGCTGTG
GTTGGCAAGCCAACTGTCCACATTGTGATGCGCATTTTACTTTGCATTCACAGCCCTACCATTATTTGCATTGTCATCAT
TGCGGCACAATCAATCGTCTGCCTGATCATTGTCCTGCATGTCAGAAACAAAGCTTAAAAACTATTGGGGCAGGAACAGC
AAAACTTGAAGAACATTTACAAGAGCTGTTTCCACATCATGAAGTGATTCGGGTCGATCGTGACAGCACCAGTCGAGTCG
GTAGCTGGCAAAAAATCTATGATCGCATTCAGCAAAATAAACCGAGCATTTTGTTGGGCACACAAATGCTAGCAAAAGGT
CATCATTTTCCGCATGTTACCCTTGTTGCGATTTTAGATATTGATGCAGGACTGCTCAGTGTTGATCCACGTGCACCTGA
GCGAACCGCACAGCTGATTGTGCAGGTCGCTGGCCGTGCTGGTCGTGGTGAGCATAAAGGCAGTGTTTATTTGCAAAGTT
TGCGTCCAGATCATCCGATGCTGACCACATTGATTGAACATGACTACCGCACTGTCGCCAAACAGATGCTGGCTGATCGC
AAAATTGCCCTGCTACCGCCTTATCGTTATGCAGTACTGGTTCGGGTTGAATCTAAAGATCGCGACTATAGCCAACAATT
TTTAGCTGATATTGCCCAACAATTGAGAGTGATAGCAGGCGATATCGTGGATATTTGGGGGCCCATTCCCGCACCGATGG
AACGTAAAGCTGGTCGTTATCGCGCGCATATGGTGATTTTATCAACTGATCGCGCCAAGCTGCACTTTTATTTACGTCAA
TGGTGGCAACAAGTGGTACATTTACCACGTCAGCATTTGCTCAGACTCTCGATAGATGTTGATCCACAAGAGTTTAGTTA
A

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(215-376)

Primosomal protein N C-terminal domain (PriA_C)

(647-742)

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.857

98.525

0.816