Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | O1450_RS12940 | Genome accession | NZ_CP114256 |
| Coordinates | 2684582..2684935 (+) | Length | 117 a.a. |
| NCBI ID | WP_269228766.1 | Uniprot ID | A0A9E9L3F1 |
| Organism | Acinetobacter sp. TR11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2652867..2687286 | 2684582..2684935 | within | 0 |
Gene organization within MGE regions
Location: 2652867..2687286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1450_RS12715 (O1450_12715) | - | 2652867..2653940 (-) | 1074 | WP_269228721.1 | phage portal protein | - |
| O1450_RS12720 (O1450_12720) | - | 2653937..2655751 (-) | 1815 | WP_269228722.1 | terminase family protein | - |
| O1450_RS12725 (O1450_12725) | - | 2655898..2656812 (+) | 915 | WP_269228723.1 | GPO family capsid scaffolding protein | - |
| O1450_RS12730 (O1450_12730) | - | 2656868..2657905 (+) | 1038 | WP_269228724.1 | phage major capsid protein, P2 family | - |
| O1450_RS12735 (O1450_12735) | gpM | 2657905..2658816 (+) | 912 | WP_269228725.1 | phage terminase small subunit | - |
| O1450_RS12740 (O1450_12740) | - | 2658824..2659234 (+) | 411 | WP_269228726.1 | head completion/stabilization protein | - |
| O1450_RS12745 (O1450_12745) | - | 2659231..2659437 (+) | 207 | WP_269228727.1 | tail protein X | - |
| O1450_RS12750 (O1450_12750) | - | 2659452..2659787 (+) | 336 | WP_269228728.1 | phage holin family protein | - |
| O1450_RS12755 (O1450_12755) | - | 2659784..2660329 (+) | 546 | WP_269228729.1 | N-acetylmuramidase | - |
| O1450_RS12760 (O1450_12760) | - | 2660341..2660727 (+) | 387 | WP_269228730.1 | phage tail protein | - |
| O1450_RS12765 (O1450_12765) | - | 2660724..2661161 (+) | 438 | WP_269228731.1 | phage virion morphogenesis protein | - |
| O1450_RS12770 (O1450_12770) | - | 2661318..2662154 (+) | 837 | WP_269228732.1 | DNA adenine methylase | - |
| O1450_RS12775 (O1450_12775) | - | 2662247..2662762 (+) | 516 | WP_269228733.1 | phage baseplate assembly protein V | - |
| O1450_RS12780 (O1450_12780) | - | 2662759..2663124 (+) | 366 | WP_269228734.1 | GPW/gp25 family protein | - |
| O1450_RS12785 (O1450_12785) | - | 2663121..2664020 (+) | 900 | WP_269228735.1 | baseplate J/gp47 family protein | - |
| O1450_RS12790 (O1450_12790) | - | 2664013..2664537 (+) | 525 | WP_269228736.1 | phage tail protein I | - |
| O1450_RS12795 (O1450_12795) | - | 2664556..2665527 (+) | 972 | WP_269228737.1 | hypothetical protein | - |
| O1450_RS12800 (O1450_12800) | - | 2665528..2667060 (+) | 1533 | WP_269228738.1 | phage tail protein | - |
| O1450_RS12805 (O1450_12805) | - | 2667090..2667719 (+) | 630 | WP_269228739.1 | hypothetical protein | - |
| O1450_RS12810 (O1450_12810) | - | 2667728..2668768 (+) | 1041 | WP_269228740.1 | LamG-like jellyroll fold domain-containing protein | - |
| O1450_RS12815 (O1450_12815) | - | 2668796..2669440 (+) | 645 | WP_269228741.1 | phage tail sheath C-terminal domain-containing protein | - |
| O1450_RS12820 (O1450_12820) | - | 2669441..2669947 (+) | 507 | WP_269228742.1 | phage major tail tube protein | - |
| O1450_RS12825 (O1450_12825) | - | 2669992..2670333 (+) | 342 | WP_269228743.1 | phage tail assembly protein | - |
| O1450_RS12830 (O1450_12830) | - | 2670363..2670452 (+) | 90 | WP_269228744.1 | GpE family phage tail protein | - |
| O1450_RS12835 (O1450_12835) | - | 2670461..2673136 (+) | 2676 | WP_269228745.1 | phage tail tape measure protein | - |
| O1450_RS12840 (O1450_12840) | - | 2673147..2673533 (+) | 387 | WP_269228746.1 | phage tail protein | - |
| O1450_RS12845 (O1450_12845) | - | 2673530..2674540 (+) | 1011 | WP_269228747.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| O1450_RS12850 (O1450_12850) | - | 2674537..2674704 (-) | 168 | WP_269228748.1 | hypothetical protein | - |
| O1450_RS12855 (O1450_12855) | - | 2674763..2674942 (-) | 180 | WP_269228749.1 | hypothetical protein | - |
| O1450_RS12860 (O1450_12860) | - | 2675092..2675385 (-) | 294 | WP_269228750.1 | hypothetical protein | - |
| O1450_RS12865 (O1450_12865) | - | 2675536..2675835 (-) | 300 | WP_269228751.1 | hypothetical protein | - |
| O1450_RS12870 (O1450_12870) | - | 2676269..2676463 (+) | 195 | WP_269228752.1 | hypothetical protein | - |
| O1450_RS12875 (O1450_12875) | - | 2676670..2677221 (-) | 552 | WP_269228753.1 | hypothetical protein | - |
| O1450_RS12880 (O1450_12880) | - | 2677567..2677752 (+) | 186 | WP_269228754.1 | hypothetical protein | - |
| O1450_RS12885 (O1450_12885) | - | 2677763..2678458 (+) | 696 | WP_269228755.1 | hypothetical protein | - |
| O1450_RS12890 (O1450_12890) | - | 2678455..2678787 (+) | 333 | WP_269228756.1 | hypothetical protein | - |
| O1450_RS12895 (O1450_12895) | - | 2678797..2678994 (+) | 198 | WP_269228757.1 | hypothetical protein | - |
| O1450_RS12900 (O1450_12900) | - | 2678942..2679295 (-) | 354 | WP_269228758.1 | helix-turn-helix transcriptional regulator | - |
| O1450_RS12905 (O1450_12905) | - | 2679432..2679623 (+) | 192 | WP_269228759.1 | hypothetical protein | - |
| O1450_RS12910 (O1450_12910) | - | 2679895..2680302 (+) | 408 | WP_269228760.1 | ogr/Delta-like zinc finger family protein | - |
| O1450_RS12915 (O1450_12915) | - | 2680299..2683025 (+) | 2727 | WP_269228761.1 | toprim domain-containing protein | - |
| O1450_RS12920 (O1450_12920) | - | 2683034..2683249 (+) | 216 | WP_269228762.1 | hypothetical protein | - |
| O1450_RS12925 (O1450_12925) | - | 2683315..2683746 (+) | 432 | WP_269228763.1 | DUF2528 family protein | - |
| O1450_RS12930 (O1450_12930) | - | 2683750..2684190 (+) | 441 | WP_269228764.1 | hypothetical protein | - |
| O1450_RS12935 (O1450_12935) | - | 2684187..2684585 (+) | 399 | WP_269228765.1 | hypothetical protein | - |
| O1450_RS12940 (O1450_12940) | ssb | 2684582..2684935 (+) | 354 | WP_269228766.1 | single-stranded DNA-binding protein | Machinery gene |
| O1450_RS12945 (O1450_12945) | - | 2685151..2685861 (+) | 711 | WP_269228767.1 | 3'-5' exonuclease | - |
| O1450_RS12950 (O1450_12950) | - | 2685858..2686148 (+) | 291 | WP_269228768.1 | hypothetical protein | - |
| O1450_RS12955 (O1450_12955) | - | 2686177..2687235 (-) | 1059 | WP_269228769.1 | site-specific integrase | - |
Sequence
Protein
Download Length: 117 a.a. Molecular weight: 13177.84 Da Isoelectric Point: 9.8874
>NTDB_id=765259 O1450_RS12940 WP_269228766.1 2684582..2684935(+) (ssb) [Acinetobacter sp. TR11]
MRGVNKVILVGSLGADPQKKGFPNGGSYAQFSIATSESWQDKQTGEWKENTEWHRIVANGRLGDIAAQYLKKGSKVYVEG
SLRTRLWKDQNNVERYITEVKLNSMQMLDSAPQANPY
MRGVNKVILVGSLGADPQKKGFPNGGSYAQFSIATSESWQDKQTGEWKENTEWHRIVANGRLGDIAAQYLKKGSKVYVEG
SLRTRLWKDQNNVERYITEVKLNSMQMLDSAPQANPY
Nucleotide
Download Length: 354 bp
>NTDB_id=765259 O1450_RS12940 WP_269228766.1 2684582..2684935(+) (ssb) [Acinetobacter sp. TR11]
ATGAGAGGCGTAAATAAAGTTATTTTAGTCGGTTCTCTTGGTGCAGATCCGCAGAAAAAAGGTTTTCCAAATGGCGGATC
ATATGCCCAATTTTCAATAGCAACATCTGAAAGTTGGCAAGATAAGCAAACTGGGGAATGGAAAGAAAATACAGAATGGC
ATCGCATTGTTGCCAACGGGAGATTGGGCGATATCGCTGCACAATATCTAAAAAAAGGTTCAAAAGTTTATGTCGAGGGT
TCTCTCCGAACACGATTGTGGAAAGACCAGAATAATGTTGAACGCTATATCACTGAAGTGAAGCTCAACAGCATGCAGAT
GCTCGACTCAGCCCCACAAGCAAACCCATATTAA
ATGAGAGGCGTAAATAAAGTTATTTTAGTCGGTTCTCTTGGTGCAGATCCGCAGAAAAAAGGTTTTCCAAATGGCGGATC
ATATGCCCAATTTTCAATAGCAACATCTGAAAGTTGGCAAGATAAGCAAACTGGGGAATGGAAAGAAAATACAGAATGGC
ATCGCATTGTTGCCAACGGGAGATTGGGCGATATCGCTGCACAATATCTAAAAAAAGGTTCAAAAGTTTATGTCGAGGGT
TCTCTCCGAACACGATTGTGGAAAGACCAGAATAATGTTGAACGCTATATCACTGAAGTGAAGCTCAACAGCATGCAGAT
GCTCGACTCAGCCCCACAAGCAAACCCATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
60.909 |
94.017 |
0.573 |
| ssb | Vibrio cholerae strain A1552 |
55.856 |
94.872 |
0.53 |
| ssb | Neisseria gonorrhoeae MS11 |
45.714 |
89.744 |
0.41 |
| ssb | Neisseria meningitidis MC58 |
45.714 |
89.744 |
0.41 |