Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   O1450_RS08610 Genome accession   NZ_CP114256
Coordinates   1772574..1772960 (-) Length   128 a.a.
NCBI ID   WP_004662377.1    Uniprot ID   A0A9E9L702
Organism   Acinetobacter sp. TR11     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1767574..1777960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1450_RS08580 (O1450_08580) tadA 1767875..1768399 (-) 525 WP_269228096.1 tRNA adenosine(34) deaminase TadA -
  O1450_RS08585 (O1450_08585) - 1768405..1769529 (-) 1125 WP_269230446.1 enoyl-CoA hydratase/isomerase family protein -
  O1450_RS08590 (O1450_08590) ung 1769526..1770239 (-) 714 WP_050040245.1 uracil-DNA glycosylase -
  O1450_RS08595 (O1450_08595) - 1770285..1770881 (-) 597 WP_004662372.1 6-carboxytetrahydropterin synthase -
  O1450_RS08600 (O1450_08600) gspK 1770992..1771948 (-) 957 WP_269228097.1 type II secretion system minor pseudopilin GspK -
  O1450_RS08605 (O1450_08605) xcpW 1771945..1772574 (-) 630 WP_269228098.1 type II secretion system minor pseudopilin GspJ Machinery gene
  O1450_RS08610 (O1450_08610) xcpV 1772574..1772960 (-) 387 WP_004662377.1 type II secretion system minor pseudopilin GspI Machinery gene
  O1450_RS08615 (O1450_08615) - 1772947..1773498 (-) 552 WP_269228099.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  O1450_RS08620 (O1450_08620) - 1773507..1774118 (-) 612 WP_034601445.1 TetR/AcrR family transcriptional regulator -
  O1450_RS08625 (O1450_08625) - 1774159..1774932 (-) 774 WP_269228100.1 TatD family hydrolase -
  O1450_RS08630 (O1450_08630) - 1774949..1775293 (-) 345 WP_004662384.1 PilZ domain-containing protein -
  O1450_RS08635 (O1450_08635) - 1775633..1776616 (-) 984 WP_269228101.1 DNA polymerase III subunit delta' -
  O1450_RS08640 (O1450_08640) kdsB 1776619..1777380 (-) 762 WP_269228102.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14253.70 Da        Isoelectric Point: 10.0997

>NTDB_id=765256 O1450_RS08610 WP_004662377.1 1772574..1772960(-) (xcpV) [Acinetobacter sp. TR11]
MKKIKAFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSSAILRTKAQFVAMNEVAMMEMNQEWLDGTQSKQVTSQGETWQ
IDKKAQATISPKIQRIELQVSLFNTEQGKVEAGITNMVFFNYPAKAKT

Nucleotide


Download         Length: 387 bp        

>NTDB_id=765256 O1450_RS08610 WP_004662377.1 1772574..1772960(-) (xcpV) [Acinetobacter sp. TR11]
ATGAAGAAGATTAAAGCATTTACCCTATTGGAAGTGATGGTTGCATTAGCAATATTTGCTGTCGCTGCAATTGCATTAAC
AAAAATTGCCATGCAATATACACAGTCTACATCGAGTGCGATTTTGCGAACTAAAGCACAGTTCGTTGCAATGAATGAGG
TTGCAATGATGGAAATGAATCAAGAATGGTTAGATGGAACGCAATCGAAACAAGTGACTTCTCAAGGTGAGACTTGGCAG
ATTGATAAAAAAGCACAGGCTACAATTAGTCCCAAAATACAACGTATCGAATTACAAGTAAGTTTATTTAATACTGAGCA
AGGTAAAGTTGAAGCGGGCATCACCAATATGGTGTTTTTTAATTATCCAGCAAAAGCTAAAACATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.4

97.656

0.805