Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexB   Type   Machinery gene
Locus tag   QM339_RS07580 Genome accession   NZ_CP125899
Coordinates   1534564..1536573 (-) Length   669 a.a.
NCBI ID   WP_283502221.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL3     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1529564..1541573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM339_RS07565 (QM339_07565) glpK 1531097..1532593 (-) 1497 WP_031928136.1 glycerol kinase GlpK -
  QM339_RS07570 (QM339_07570) - 1532723..1533541 (-) 819 WP_001103747.1 MIP/aquaporin family protein -
  QM339_RS07575 (QM339_07575) - 1534016..1534558 (-) 543 WP_001072707.1 glycerol-3-phosphate responsive antiterminator -
  QM339_RS07580 (QM339_07580) hexB 1534564..1536573 (-) 2010 WP_283502221.1 DNA mismatch repair endonuclease MutL Machinery gene
  QM339_RS07585 (QM339_07585) hexA 1536586..1539204 (-) 2619 WP_283502222.1 DNA mismatch repair protein MutS Machinery gene
  QM339_RS07590 (QM339_07590) thiW 1539507..1539998 (-) 492 WP_000842278.1 energy coupling factor transporter S component ThiW -
  QM339_RS07595 (QM339_07595) - 1540025..1540390 (-) 366 WP_000282383.1 RicAFT regulatory complex protein RicA family protein -

Sequence


Protein


Download         Length: 669 a.a.        Molecular weight: 76887.08 Da        Isoelectric Point: 4.9728

>NTDB_id=765217 QM339_RS07580 WP_283502221.1 1534564..1536573(-) (hexB) [Staphylococcus aureus strain CHAL3]
MGKIKELQTSLANKIAAGEVVERPSSVVKELLENAIDAGATEISIEVEESGVQSIRVVDNGSGIEAEDLGLVFHRHATSK
LDQDEDLFHIRTLGFRGEALASISSVAKVTLKTCTDNANGNEIYVENGEILNHKPAKAKKGTDILVESLFYNTPARLKYI
KSLYTELGKITDIVNRMAMSHPDIRIALISDGKTMLSTNGSGRTNEVMAEIYGMKVARDLVHISGDTSDYHIEGFVAKPE
HSRSNKHYISIFINGRYIKNFMLNKAILEGYHTLLTIGRFPICYINIEMDPILVDVNVHPTKLEVRLSKEEQLYQLIVSK
IQEAFKDCILIPKNNLDYVPKKNKVLHSFEQQKIEFEQRQNTEDNQEKTFSSEESNRKPFMAENQNDEIVIREDSYNPFV
TKTSESLIADDESSGYNDTREKDEDYFKKQQEILQEMDQTFDSNDDTSVQNYENKASDDYYDVNDIKGTKSKDPKRRIPY
MEIVGQVHGTYIIAQNEFGMYMIDQHAAQERIKYEYFRDKIGEVTNEVQDLLIPLTFHFSKDEQLVIDQYKNELQQVGIM
LEHFGGHDYIVSSYPVWFPKDEVEEIIKDMIELILEEKKVDIKKLREDVAIMMSCKKSIKANHYLQKHEMSDLIDQLREA
EDPFTCPHGRPIIINFSKYELEKLFKRVM

Nucleotide


Download         Length: 2010 bp        

>NTDB_id=765217 QM339_RS07580 WP_283502221.1 1534564..1536573(-) (hexB) [Staphylococcus aureus strain CHAL3]
ATGGGGAAAATTAAAGAACTCCAAACCTCATTAGCAAATAAAATCGCAGCAGGTGAAGTAGTTGAAAGACCGAGTTCTGT
TGTGAAAGAACTGTTGGAAAATGCTATAGATGCAGGCGCTACAGAAATAAGCATTGAAGTAGAGGAATCTGGCGTCCAAT
CTATTCGCGTAGTCGATAATGGAAGCGGAATTGAAGCGGAAGACTTAGGATTAGTATTTCATAGACATGCGACTAGTAAA
TTAGATCAAGATGAAGATTTATTTCATATTAGGACATTAGGATTCCGTGGTGAAGCACTAGCTAGTATTTCATCAGTTGC
TAAAGTAACATTGAAGACTTGCACGGATAATGCTAATGGAAATGAAATATATGTAGAAAATGGTGAAATATTAAATCATA
AGCCTGCAAAAGCGAAAAAAGGAACAGATATACTTGTAGAATCATTATTTTATAATACACCAGCACGTTTAAAATATATT
AAAAGTTTATATACTGAACTAGGTAAAATAACTGATATAGTCAACAGAATGGCAATGAGCCATCCGGACATTCGAATAGC
ACTCATTTCAGATGGCAAAACAATGTTAAGTACAAATGGTTCAGGACGAACTAATGAAGTGATGGCAGAGATCTATGGGA
TGAAAGTTGCACGAGATTTAGTACATATATCTGGAGATACAAGTGATTATCACATTGAAGGTTTTGTTGCAAAGCCTGAA
CATTCTAGAAGTAATAAGCACTATATTTCTATTTTTATTAATGGACGATACATTAAAAACTTTATGCTAAATAAAGCGAT
TTTAGAAGGCTATCATACACTCTTAACAATAGGTAGGTTCCCGATTTGTTATATTAATATTGAAATGGATCCAATCTTAG
TAGACGTTAATGTTCATCCAACAAAACTAGAAGTGCGTTTATCAAAAGAAGAGCAACTATATCAATTGATAGTGAGCAAA
ATACAAGAAGCATTTAAAGACTGTATATTAATTCCTAAAAATAACTTGGATTATGTGCCGAAAAAAAATAAAGTGTTACA
TTCATTCGAACAACAAAAAATCGAATTTGAACAAAGACAAAACACAGAGGATAACCAAGAGAAGACGTTTTCATCTGAAG
AAAGTAACCGTAAGCCATTTATGGCAGAAAATCAAAACGATGAGATAGTTATAAGAGAAGATTCATATAATCCATTCGTA
ACGAAAACGTCTGAAAGTTTAATAGCTGATGATGAATCTTCCGGTTATAATGATACACGTGAAAAAGATGAAGACTACTT
CAAAAAACAACAAGAAATTTTACAAGAAATGGATCAAACATTTGATTCAAATGACGATACTTCTGTGCAAAATTATGAGA
ATAAAGCGTCTGATGATTATTATGATGTGAACGATATTAAAGGAACAAAAAGTAAAGACCCTAAACGAAGAATTCCATAT
ATGGAAATTGTTGGCCAAGTACATGGAACGTATATTATTGCTCAAAATGAATTTGGCATGTACATGATTGACCAGCATGC
AGCTCAAGAAAGAATAAAATATGAATATTTTCGAGATAAAATAGGTGAAGTTACCAATGAAGTACAAGATTTATTAATCC
CGTTAACATTTCATTTTTCAAAAGATGAACAATTAGTCATTGATCAATATAAAAATGAGCTTCAACAAGTAGGTATCATG
TTAGAACATTTTGGTGGTCATGATTATATTGTAAGTAGCTATCCAGTTTGGTTCCCTAAAGATGAAGTAGAAGAAATTAT
TAAAGATATGATTGAGCTAATTTTGGAAGAGAAAAAAGTAGATATCAAAAAATTACGTGAAGACGTAGCAATCATGATGT
CATGTAAAAAATCTATTAAAGCGAATCATTATTTACAAAAACATGAAATGTCTGATTTAATTGATCAATTAAGAGAAGCG
GAAGATCCATTTACATGTCCACATGGTCGTCCAATTATCATTAATTTTTCAAAATACGAATTAGAAAAATTATTTAAGCG
TGTGATGTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

40.828

100

0.413