Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QM339_RS03485 Genome accession   NZ_CP125899
Coordinates   728611..730392 (+) Length   593 a.a.
NCBI ID   WP_000983676.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 723611..735392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM339_RS03475 (QM339_03475) ltaS 724505..726445 (+) 1941 WP_000098285.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  QM339_RS03480 (QM339_03480) - 726716..728599 (+) 1884 WP_000525111.1 ABC-F family ATP-binding cassette domain-containing protein -
  QM339_RS03485 (QM339_03485) recQ 728611..730392 (+) 1782 WP_000983676.1 DNA helicase RecQ Machinery gene
  QM339_RS03490 (QM339_03490) - 730613..731590 (+) 978 WP_031928159.1 ABC transporter ATP-binding protein -
  QM339_RS03495 (QM339_03495) - 731583..733097 (+) 1515 WP_000606781.1 ABC transporter permease/substrate-binding protein -
  QM339_RS03500 (QM339_03500) hisC 733337..734395 (+) 1059 WP_000663021.1 histidinol-phosphate transaminase -
  QM339_RS03505 (QM339_03505) - 734553..735101 (+) 549 WP_000197263.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68142.06 Da        Isoelectric Point: 6.8095

>NTDB_id=765176 QM339_RS03485 WP_000983676.1 728611..730392(+) (recQ) [Staphylococcus aureus strain CHAL3]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRALFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=765176 QM339_RS03485 WP_000983676.1 728611..730392(+) (recQ) [Staphylococcus aureus strain CHAL3]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTTATATCATTAATGAAAGATCAAGTGGATCAATTAAAAGCGATGGGAATTCAA
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCATTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGACATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACA
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAATTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTATATTAGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTTGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCTA
ATGTACGTTTTGTTATACATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGACGTGCAGGTCGTGAC
GGATTGAAGAGTGAATGTATTTTGTTATTTAGCGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCACAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTGGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGTTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGACCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGCATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACAATAGCACCTGTAAGTATATTTTCTGATTACACGTTAGAAGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(217-320)

HRDC domain (HRDC)

(520-586)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

RQC domain (RQC)

(400-500)

DEAD/DEAH box helicase (DEAD)

(17-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.542

99.494

0.423