Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QM341_RS03930 Genome accession   NZ_CP125897
Coordinates   785427..786398 (+) Length   323 a.a.
NCBI ID   WP_045189221.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CHAL4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 780427..791398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM341_RS03910 (QM341_03910) nrdI 781164..781562 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  QM341_RS03915 (QM341_03915) nrdE 781525..783630 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QM341_RS03920 (QM341_03920) nrdF 783748..784719 (+) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QM341_RS03925 (QM341_03925) - 785233..785388 (+) 156 WP_000499195.1 hypothetical protein -
  QM341_RS03930 (QM341_03930) ceuB 785427..786398 (+) 972 WP_045189221.1 ABC transporter permease Machinery gene
  QM341_RS03935 (QM341_03935) - 786385..787341 (+) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  QM341_RS03940 (QM341_03940) - 787338..788099 (+) 762 WP_000616842.1 ABC transporter ATP-binding protein -
  QM341_RS03945 (QM341_03945) - 788218..789246 (+) 1029 WP_000754443.1 siderophore ABC transporter substrate-binding protein -
  QM341_RS03950 (QM341_03950) - 789563..789877 (-) 315 WP_001127269.1 CHY zinc finger protein -
  QM341_RS03955 (QM341_03955) murB 789895..790818 (-) 924 WP_000608440.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35570.07 Da        Isoelectric Point: 10.1194

>NTDB_id=765088 QM341_RS03930 WP_045189221.1 785427..786398(+) (ceuB) [Staphylococcus aureus strain CHAL4]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSTCGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=765088 QM341_RS03930 WP_045189221.1 785427..786398(+) (ceuB) [Staphylococcus aureus strain CHAL4]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTACTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTTTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACAACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCAATTTATCGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471