Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   O1V13_RS29845 Genome accession   NZ_CP114201
Coordinates   6573238..6574854 (-) Length   538 a.a.
NCBI ID   WP_269197805.1    Uniprot ID   -
Organism   Delftia acidovorans strain BIM B-1761     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6568238..6579854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1V13_RS29830 (O1V13_29840) - 6569193..6569690 (-) 498 WP_269197802.1 hypothetical protein -
  O1V13_RS29835 (O1V13_29845) - 6569747..6570886 (-) 1140 WP_269197803.1 slipin family protein -
  O1V13_RS29840 (O1V13_29850) rtcR 6571584..6573191 (+) 1608 WP_269197804.1 RNA repair transcriptional activator RtcR -
  O1V13_RS29845 (O1V13_29855) rpoN/rpoN1 6573238..6574854 (-) 1617 WP_269197805.1 RNA polymerase factor sigma-54 Machinery gene
  O1V13_RS29850 (O1V13_29860) lptB 6574909..6575697 (-) 789 WP_012202605.1 LPS export ABC transporter ATP-binding protein -
  O1V13_RS29855 (O1V13_29865) lptA 6575694..6576356 (-) 663 WP_013804753.1 lipopolysaccharide transport periplasmic protein LptA -
  O1V13_RS29860 (O1V13_29870) - 6576528..6577178 (-) 651 WP_013804754.1 thiol:disulfide interchange protein DsbA/DsbL -
  O1V13_RS29865 (O1V13_29875) - 6577260..6577949 (-) 690 WP_012202602.1 SPOR domain-containing protein -
  O1V13_RS29870 (O1V13_29880) argS 6577970..6579667 (-) 1698 WP_043825927.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 538 a.a.        Molecular weight: 59305.39 Da        Isoelectric Point: 4.6422

>NTDB_id=765028 O1V13_RS29845 WP_269197805.1 6573238..6574854(-) (rpoN/rpoN1) [Delftia acidovorans strain BIM B-1761]
MKPGLSLRVSQHLSLTPQLQQSIQLLQLSTLELAQEVEQMLGDNPFLELANEEGDHDAAAGTREPAAPGAEATESFQESR
ADQPSATVEWEPSADASSGDAVETSGTAESLSWEGDGQTNSGNDDRDWGSDAPSSRTRGQGEEDEADATELARSAESLTD
HLHRQALSLRLGEVDRAALRFLIENLNDDGYLEDPLDELAQGLAGDDLEECEELVHRFTVALRLLQSLEPVGVGARDLAE
CLTLQLRDQLADAEREGNGSAEDEDRQAVLRTALDICAQPMDLLARRDLRKLASLCGAREERLREALVLITRLEPRPGRR
FADVQRQIVVPDVIVRPVRSGAGRMDFSVQLNPDVMPKLRVHDIYASALRSHRGSEGHAALQQRLQEARWFIKNIQQRFD
TILRVSQAIVERQKNFFVHGELAMRPLVLRDIADALGLHESTISRVTTAKYMATPQGTYELKYFFGSGLGTEAGGNASST
AVRALIKQFVAAEDPKKPLSDNQLADMLKEQGIECARRTVAKYRELLKIPPTTLRKAL

Nucleotide


Download         Length: 1617 bp        

>NTDB_id=765028 O1V13_RS29845 WP_269197805.1 6573238..6574854(-) (rpoN/rpoN1) [Delftia acidovorans strain BIM B-1761]
TTGAAGCCCGGTCTGTCGCTGCGCGTCTCCCAGCATCTTTCGCTCACTCCCCAGCTGCAGCAGTCGATACAGCTGCTGCA
GCTGTCCACGCTGGAGCTGGCGCAGGAAGTGGAGCAGATGCTGGGCGACAACCCCTTCCTGGAGCTGGCGAACGAGGAGG
GCGATCACGATGCGGCCGCTGGCACCCGCGAGCCTGCCGCGCCCGGCGCCGAGGCCACGGAGTCCTTCCAGGAAAGCCGC
GCAGACCAGCCTTCGGCGACGGTGGAGTGGGAGCCCTCGGCGGACGCATCCTCCGGCGATGCCGTGGAGACTTCCGGCAC
GGCCGAGTCCCTGAGCTGGGAAGGCGACGGCCAGACCAACTCGGGCAACGATGACCGCGACTGGGGCAGCGACGCGCCCT
CCAGCCGCACGCGCGGGCAGGGCGAGGAAGACGAGGCCGATGCCACCGAACTGGCACGCAGCGCCGAAAGCCTGACCGAC
CACCTGCACCGCCAGGCCCTGAGCCTGCGCCTGGGCGAGGTGGACCGCGCCGCACTGCGCTTTCTGATCGAGAACCTCAA
CGACGACGGCTACCTGGAAGACCCGCTCGACGAGCTGGCACAGGGCCTGGCGGGCGACGACCTGGAGGAGTGCGAGGAGC
TGGTGCACCGCTTCACCGTGGCGCTGCGCCTGCTGCAAAGTCTGGAGCCCGTGGGCGTGGGCGCGCGCGACCTGGCCGAA
TGCCTGACGCTGCAACTGCGCGACCAGCTGGCCGATGCCGAGCGCGAAGGCAACGGCAGTGCCGAGGACGAAGACCGCCA
GGCCGTGCTGCGCACCGCGCTGGACATCTGCGCCCAGCCCATGGACCTGCTGGCGCGGCGCGACCTGCGCAAGCTCGCCA
GCCTGTGCGGTGCGCGCGAGGAGCGGCTGCGCGAGGCGCTGGTGCTGATCACCCGGCTGGAGCCACGCCCGGGCCGGCGC
TTTGCCGACGTGCAGCGCCAGATCGTCGTGCCCGACGTCATCGTGCGCCCCGTGCGCAGCGGCGCGGGCCGCATGGACTT
CAGCGTGCAGCTCAACCCCGACGTCATGCCCAAGCTGCGCGTGCACGACATCTATGCCAGCGCGCTGCGCAGCCACAGGG
GCAGCGAAGGCCATGCAGCGTTGCAGCAGCGGCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGAC
ACCATCCTGCGCGTGTCGCAGGCCATCGTGGAGCGCCAGAAGAACTTCTTCGTGCATGGCGAGCTGGCCATGCGCCCGCT
GGTGCTGCGCGACATTGCCGATGCGCTGGGCCTGCATGAATCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCA
CGCCGCAGGGCACCTACGAGCTCAAGTACTTCTTCGGCTCGGGCCTGGGCACCGAGGCCGGTGGCAATGCCTCCAGCACG
GCCGTGCGCGCGCTGATCAAGCAGTTCGTCGCGGCCGAAGACCCCAAGAAGCCGCTGTCGGACAACCAGCTCGCCGACAT
GCTCAAGGAGCAGGGCATCGAATGCGCGCGGCGCACGGTGGCCAAGTACCGCGAGCTGCTCAAGATCCCGCCGACCACGC
TGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-49)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(149-365)

Sigma-54, DNA binding domain (Sigma54_DBD)

(380-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.111

100

0.513