Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   H7R28_RS15675 Genome accession   NZ_AP022069
Coordinates   3240901..3241530 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain WP4-W18-ESBL-09     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3235901..3246530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R28_RS15660 (WP4W18E09_30390) helD 3236143..3238197 (-) 2055 WP_020232990.1 DNA helicase IV -
  H7R28_RS15665 (WP4W18E09_30400) yccF 3238320..3238766 (+) 447 WP_001261235.1 YccF domain-containing protein -
  H7R28_RS15670 (WP4W18E09_30410) yccS 3238776..3240938 (+) 2163 WP_000875041.1 YccS family putative transporter -
  H7R28_RS15675 (WP4W18E09_30420) sxy/tfoX 3240901..3241530 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  H7R28_RS15680 (WP4W18E09_30430) sulA 3241749..3242258 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  H7R28_RS15685 (WP4W18E09_30440) ompA 3242615..3243667 (+) 1053 WP_000750418.1 porin OmpA -
  H7R28_RS15690 (WP4W18E09_30450) matP 3243742..3244194 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  H7R28_RS15695 (WP4W18E09_30460) ycbZ 3244380..3246140 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=76501 H7R28_RS15675 WP_000839153.1 3240901..3241530(-) (sxy/tfoX) [Escherichia coli strain WP4-W18-ESBL-09]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=76501 H7R28_RS15675 WP_000839153.1 3240901..3241530(-) (sxy/tfoX) [Escherichia coli strain WP4-W18-ESBL-09]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment