Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   O1Q84_RS20880 Genome accession   NZ_CP114195
Coordinates   817535..818632 (-) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain vp-HL-202005     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 812535..823632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q84_RS20865 (O1Q84_20865) - 813199..814254 (-) 1056 WP_025623626.1 HlyD family secretion protein -
  O1Q84_RS20870 (O1Q84_20870) slyA 814292..814747 (-) 456 WP_017447361.1 transcriptional regulator SlyA -
  O1Q84_RS20875 (O1Q84_20875) luxQ 814959..817535 (-) 2577 WP_069535895.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  O1Q84_RS20880 (O1Q84_20880) luxP 817535..818632 (-) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  O1Q84_RS20885 (O1Q84_20885) - 818984..819304 (-) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  O1Q84_RS20890 (O1Q84_20890) - 819301..819951 (-) 651 WP_069535896.1 YceH family protein -
  O1Q84_RS20895 (O1Q84_20895) - 820128..820343 (-) 216 WP_005477197.1 hypothetical protein -
  O1Q84_RS20900 (O1Q84_20900) - 820671..820985 (+) 315 WP_005453573.1 DUF496 family protein -
  O1Q84_RS20905 (O1Q84_20905) - 821108..822445 (+) 1338 WP_015313432.1 MATE family efflux transporter -
  O1Q84_RS20910 (O1Q84_20910) - 822519..823496 (-) 978 WP_005477354.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=764999 O1Q84_RS20880 WP_005463467.1 817535..818632(-) (luxP) [Vibrio parahaemolyticus strain vp-HL-202005]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=764999 O1Q84_RS20880 WP_005463467.1 817535..818632(-) (luxP) [Vibrio parahaemolyticus strain vp-HL-202005]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTTCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTAGAGTTTGGCAAGCAGTTCCCAAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGAGCCGTTGAAGCGCTGTCTGAACTTGGTCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644