Detailed information NTG0764980

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O1Q84_RS14260
• Genome accession: NZ_CP114194
• Coordinates: 2931980..2932969 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain vp-HL-202005
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2926980..2937969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O1Q84_RS14245 (O1Q84_14245)	recA	2927529..2928572 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
O1Q84_RS14250 (O1Q84_14250)	pncC	2928773..2929255 (-)	483	WP_025505116.1	nicotinamide-nucleotide amidase	-
O1Q84_RS14255 (O1Q84_14255)	mutS	2929340..2931901 (+)	2562	WP_069536392.1	DNA mismatch repair protein MutS	-
O1Q84_RS14260 (O1Q84_14260)	rpoS	2931980..2932969 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
O1Q84_RS14265 (O1Q84_14265)	-	2933050..2933973 (-)	924	WP_069536393.1	peptidoglycan DD-metalloendopeptidase family protein	-
O1Q84_RS14270 (O1Q84_14270)	-	2933988..2934614 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
O1Q84_RS14275 (O1Q84_14275)	surE	2934614..2935390 (-)	777	WP_042762073.1	5'/3'-nucleotidase SurE	-
O1Q84_RS14280 (O1Q84_14280)	truD	2935390..2936433 (-)	1044	WP_069536394.1	tRNA pseudouridine(13) synthase TruD	-
O1Q84_RS14285 (O1Q84_14285)	ispF	2936480..2936956 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O1Q84_RS14290 (O1Q84_14290)	ispD	2936974..2937678 (-)	705	WP_069536395.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O1Q84_RS14295 (O1Q84_14295)	ftsB	2937680..2937961 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=764980 O1Q84_RS14260 WP_005478537.1 2931980..2932969(-) (rpoS) [Vibrio parahaemolyticus strain vp-HL-202005]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=764980 O1Q84_RS14260 WP_005478537.1 2931980..2932969(-) (rpoS) [Vibrio parahaemolyticus strain vp-HL-202005]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851