Detailed information NTG0764928

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O2T11_RS13450
• Genome accession: NZ_CP114186
• Coordinates: 2824443..2825432 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain PH1273
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2819443..2830432

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O2T11_RS13435 (O2T11_13435)	-	2819565..2820197 (+)	633	Protein_2532	IS5 family transposase	-
O2T11_RS13440 (O2T11_13440)	-	2820265..2821605 (-)	1341	WP_140331138.1	site-specific integrase	-
O2T11_RS13445 (O2T11_13445)	mutS	2821778..2824363 (+)	2586	WP_283658226.1	DNA mismatch repair protein MutS	-
O2T11_RS13450 (O2T11_13450)	rpoS	2824443..2825432 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
O2T11_RS13455 (O2T11_13455)	-	2825513..2826436 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
O2T11_RS13460 (O2T11_13460)	-	2826451..2827077 (-)	627	WP_023585674.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
O2T11_RS13465 (O2T11_13465)	surE	2827077..2827853 (-)	777	WP_140079007.1	5'/3'-nucleotidase SurE	-
O2T11_RS13470 (O2T11_13470)	truD	2827853..2828896 (-)	1044	WP_023585673.1	tRNA pseudouridine(13) synthase TruD	-
O2T11_RS13475 (O2T11_13475)	ispF	2828943..2829419 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O2T11_RS13480 (O2T11_13480)	ispD	2829437..2830141 (-)	705	WP_005487195.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O2T11_RS13485 (O2T11_13485)	ftsB	2830143..2830424 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=764928 O2T11_RS13450 WP_005478537.1 2824443..2825432(-) (rpoS) [Vibrio parahaemolyticus strain PH1273]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=764928 O2T11_RS13450 WP_005478537.1 2824443..2825432(-) (rpoS) [Vibrio parahaemolyticus strain PH1273]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGTAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851