Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   O2T11_RS09725 Genome accession   NZ_CP114186
Coordinates   1988166..1989587 (+) Length   473 a.a.
NCBI ID   WP_024702674.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1273     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1983166..1994587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T11_RS09705 (O2T11_09705) - 1983225..1983977 (-) 753 WP_031791212.1 adenosylcobinamide-GDP ribazoletransferase -
  O2T11_RS09710 (O2T11_09710) cobT 1984022..1985065 (-) 1044 WP_025508768.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  O2T11_RS09715 (O2T11_09715) - 1985749..1986444 (+) 696 WP_017448627.1 NAD(P)H-binding protein -
  O2T11_RS09720 (O2T11_09720) - 1986637..1988010 (+) 1374 WP_005486634.1 L-cystine transporter -
  O2T11_RS09725 (O2T11_09725) sbcB 1988166..1989587 (+) 1422 WP_024702674.1 exodeoxyribonuclease I Machinery gene
  O2T11_RS09730 (O2T11_09730) - 1989643..1990017 (+) 375 WP_005455074.1 CidA/LrgA family protein -
  O2T11_RS09735 (O2T11_09735) - 1990019..1990696 (+) 678 WP_005454891.1 LrgB family protein -
  O2T11_RS09740 (O2T11_09740) cdd 1991061..1991948 (+) 888 WP_015296604.1 cytidine deaminase -
  O2T11_RS09745 (O2T11_09745) purT 1992096..1993271 (+) 1176 WP_029823377.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  O2T11_RS09750 (O2T11_09750) - 1993373..1994023 (-) 651 WP_058964530.1 thiopurine S-methyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54669.00 Da        Isoelectric Point: 5.0454

>NTDB_id=764911 O2T11_RS09725 WP_024702674.1 1988166..1989587(+) (sbcB) [Vibrio parahaemolyticus strain PH1273]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRERQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=764911 O2T11_RS09725 WP_024702674.1 1988166..1989587(+) (sbcB) [Vibrio parahaemolyticus strain PH1273]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAACGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.958

100

0.801