Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   O1N17_RS19205 Genome accession   NZ_CP114184
Coordinates   610969..612066 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus strain PH1339     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 605969..617066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1N17_RS19175 (O1N17_19165) - 606105..607082 (+) 978 WP_015313433.1 Gfo/Idh/MocA family oxidoreductase -
  O1N17_RS19180 (O1N17_19170) - 607156..608493 (-) 1338 WP_031856089.1 MATE family efflux transporter -
  O1N17_RS19185 (O1N17_19175) - 608616..608930 (-) 315 WP_005453573.1 DUF496 family protein -
  O1N17_RS19190 (O1N17_19180) - 609258..609473 (+) 216 WP_005477197.1 hypothetical protein -
  O1N17_RS19195 (O1N17_19185) - 609650..610300 (+) 651 WP_005499314.1 YceH family protein -
  O1N17_RS19200 (O1N17_19190) - 610297..610617 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  O1N17_RS19205 (O1N17_19195) luxP 610969..612066 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  O1N17_RS19210 (O1N17_19200) luxQ 612066..614642 (+) 2577 WP_025521028.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  O1N17_RS19215 (O1N17_19205) - 614854..615309 (+) 456 WP_025525184.1 MarR family transcriptional regulator -
  O1N17_RS19220 (O1N17_19210) - 615347..616402 (+) 1056 WP_025623626.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=764899 O1N17_RS19205 WP_005463467.1 610969..612066(+) (luxP) [Vibrio parahaemolyticus strain PH1339]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=764899 O1N17_RS19205 WP_005463467.1 610969..612066(+) (luxP) [Vibrio parahaemolyticus strain PH1339]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCCGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGCCCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGCGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGTGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTGGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTAATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644