Detailed information NTG0764869

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: O1N17_RS02825
• Genome accession: NZ_CP114183
• Coordinates: 580358..581347 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain PH1339
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 575358..586347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O1N17_RS02790 (O1N17_02795)	ftsB	575366..575647 (+)	282	WP_005455577.1	cell division protein FtsB	-
O1N17_RS02795 (O1N17_02800)	ispD	575649..576353 (+)	705	WP_005478544.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O1N17_RS02800 (O1N17_02805)	ispF	576371..576847 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O1N17_RS02805 (O1N17_02810)	truD	576894..577937 (+)	1044	WP_021450029.1	tRNA pseudouridine(13) synthase TruD	-
O1N17_RS02810 (O1N17_02815)	surE	577937..578713 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
O1N17_RS02815 (O1N17_02820)	-	578713..579339 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
O1N17_RS02820 (O1N17_02825)	-	579354..580277 (+)	924	WP_021486791.1	peptidoglycan DD-metalloendopeptidase family protein	-
O1N17_RS02825 (O1N17_02830)	rpoS	580358..581347 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
O1N17_RS02830 (O1N17_02835)	mutS	581427..583988 (-)	2562	WP_085577166.1	DNA mismatch repair protein MutS	-
O1N17_RS02835 (O1N17_02840)	pncC	584073..584555 (+)	483	WP_005455551.1	nicotinamide-nucleotide amidase	-
O1N17_RS02840 (O1N17_02845)	recA	584756..585799 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=764869 O1N17_RS02825 WP_005478537.1 580358..581347(+) (rpoS) [Vibrio parahaemolyticus strain PH1339]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=764869 O1N17_RS02825 WP_005478537.1 580358..581347(+) (rpoS) [Vibrio parahaemolyticus strain PH1339]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCTGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851