Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   O1Q77_RS01670 Genome accession   NZ_CP114182
Coordinates   348744..350183 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain AS1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343744..355183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q77_RS01640 (O1Q77_01640) mlaF 344321..345121 (-) 801 WP_252412772.1 phospholipid ABC transporter ATP-binding protein MlaF -
  O1Q77_RS01645 (O1Q77_01645) - 345329..346324 (+) 996 WP_123172219.1 KpsF/GutQ family sugar-phosphate isomerase -
  O1Q77_RS01650 (O1Q77_01650) kdsC 346324..346878 (+) 555 WP_279490111.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  O1Q77_RS01655 (O1Q77_01655) lptC 346875..347435 (+) 561 WP_047438732.1 LPS export ABC transporter periplasmic protein LptC -
  O1Q77_RS01660 (O1Q77_01660) lptA 347422..347949 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  O1Q77_RS01665 (O1Q77_01665) lptB 347953..348678 (+) 726 WP_304520460.1 LPS export ABC transporter ATP-binding protein -
  O1Q77_RS01670 (O1Q77_01670) rpoN/rpoN1 348744..350183 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  O1Q77_RS01675 (O1Q77_01675) hpf 350204..350491 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  O1Q77_RS01680 (O1Q77_01680) ptsN 350494..350940 (+) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  O1Q77_RS01685 (O1Q77_01685) rapZ 350986..351852 (+) 867 WP_021231839.1 RNase adapter RapZ -
  O1Q77_RS01690 (O1Q77_01690) npr 351873..352145 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  O1Q77_RS01695 (O1Q77_01695) - 352163..354067 (-) 1905 WP_304520461.1 transcription antiterminator -
  O1Q77_RS01700 (O1Q77_01700) - 354175..354915 (-) 741 WP_304520462.1 KDGP aldolase family protein -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=764830 O1Q77_RS01670 WP_005336331.1 348744..350183(+) (rpoN/rpoN1) [Aeromonas veronii strain AS1]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=764830 O1Q77_RS01670 WP_005336331.1 348744..350183(+) (rpoN/rpoN1) [Aeromonas veronii strain AS1]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCTCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCATGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATTTGTTGTGGCAGATGCGACTAACACCGTTCA
GCGATGTGGATGCAGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTTACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTTAAGCGGGTTCAGCACTT
CGATCCGGTCGGTATTGCTGCCCGTTCTGTGCAGGAGTGTTTGTTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAAGAGAGCGACCTCAAGGAGGTGCTGGATTTGATCCAGCTGCTGGAGCCGCGTCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCTGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491