Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   M1L51_RS13105 Genome accession   NZ_CP114180
Coordinates   2701782..2702534 (-) Length   250 a.a.
NCBI ID   WP_015417928.1    Uniprot ID   -
Organism   Bacillus velezensis strain DMW1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2696782..2707534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1L51_RS13080 mreC 2697218..2698081 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  M1L51_RS13085 mreB 2698112..2699125 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  M1L51_RS13090 radC 2699217..2699912 (-) 696 WP_007408165.1 RadC family protein -
  M1L51_RS13095 - 2699944..2700513 (-) 570 WP_015417926.1 Maf family protein -
  M1L51_RS13100 - 2700654..2701655 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  M1L51_RS13105 comC 2701782..2702534 (-) 753 WP_015417928.1 prepilin peptidase Machinery gene
  M1L51_RS13110 - 2702674..2703966 (-) 1293 WP_053573156.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  M1L51_RS13115 - 2704025..2706667 (-) 2643 WP_020956152.1 valine--tRNA ligase -
  M1L51_RS13120 - 2707120..2707311 (+) 192 WP_053573155.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27247.99 Da        Isoelectric Point: 9.4293

>NTDB_id=764801 M1L51_RS13105 WP_015417928.1 2701782..2702534(-) (comC) [Bacillus velezensis strain DMW1]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSACSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGRLGKKQPFPFAPAISVGSALSYLYGEELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=764801 M1L51_RS13105 WP_015417928.1 2701782..2702534(-) (comC) [Bacillus velezensis strain DMW1]
GTGCTTTTGATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCAGCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTTTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGTCGTGCGAAGCTGTCGGTTATGTATCCGGCGGCGGAATGCTGGACGGCG
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTGCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCAGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTCTCCGTTATGATCGGAGCCGTATACGGTATGTGCGCCGCAGCCCGGGGCAGGCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGTCGGGAGCGCTTTGAGTTATTTATACGGTGAAGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)

Type IV leader peptidase family (Peptidase_A24)

(101-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58