Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QMY05_RS17885 Genome accession   NZ_CP125885
Coordinates   3678455..3679060 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain AHS8C65RI     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3673455..3684060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY05_RS17865 (QMY05_17825) aes 3673492..3674451 (+) 960 WP_000801832.1 acetyl esterase -
  QMY05_RS17870 (QMY05_17830) hemH 3674448..3675410 (-) 963 WP_001250088.1 ferrochelatase -
  QMY05_RS17875 (QMY05_17835) adk 3675646..3676290 (-) 645 WP_001220233.1 adenylate kinase -
  QMY05_RS17880 (QMY05_17840) htpG 3676471..3678345 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  QMY05_RS17885 (QMY05_17845) recR 3678455..3679060 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QMY05_RS17890 (QMY05_17850) ybaB 3679060..3679389 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QMY05_RS17895 (QMY05_17855) dnaX 3679442..3681373 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  QMY05_RS17900 (QMY05_17860) apt 3681502..3682053 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QMY05_RS17905 (QMY05_17865) ybaN 3682206..3682583 (-) 378 WP_001188905.1 DUF454 family protein -
  QMY05_RS17910 (QMY05_17870) priC 3682653..3683180 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  QMY05_RS17915 (QMY05_17875) rsmS 3683194..3683355 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=764795 QMY05_RS17885 WP_001195025.1 3678455..3679060(-) (recR) [Escherichia coli strain AHS8C65RI]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=764795 QMY05_RS17885 WP_001195025.1 3678455..3679060(-) (recR) [Escherichia coli strain AHS8C65RI]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443