Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   M1L51_RS11955 Genome accession   NZ_CP114180
Coordinates   2505520..2506287 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain DMW1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2500520..2511287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1L51_RS11935 - 2500722..2501534 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  M1L51_RS11940 ccpN 2501560..2502198 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  M1L51_RS11945 glyS 2502299..2504338 (-) 2040 WP_053573188.1 glycine--tRNA ligase subunit beta -
  M1L51_RS11950 glyQ 2504331..2505218 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  M1L51_RS11955 recO 2505520..2506287 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  M1L51_RS11960 - 2506324..2506467 (-) 144 WP_007408286.1 YqzL family protein -
  M1L51_RS11965 era 2506623..2507528 (-) 906 WP_007408285.1 GTPase Era -
  M1L51_RS11970 - 2507509..2507919 (-) 411 WP_003152976.1 cytidine deaminase -
  M1L51_RS11975 - 2508043..2508417 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  M1L51_RS11980 ybeY 2508398..2508871 (-) 474 WP_012118016.1 rRNA maturation RNase YbeY -
  M1L51_RS11985 - 2508872..2511004 (-) 2133 WP_053573187.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=764794 M1L51_RS11955 WP_007408287.1 2505520..2506287(-) (recO) [Bacillus velezensis strain DMW1]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=764794 M1L51_RS11955 WP_007408287.1 2505520..2506287(-) (recO) [Bacillus velezensis strain DMW1]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAATGAAATTAAACGGGTCATTGATCTGTATTACGAAGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89