Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LPC25_RS01660 Genome accession   NZ_AP025176
Coordinates   383401..384246 (+) Length   281 a.a.
NCBI ID   WP_101244956.1    Uniprot ID   -
Organism   Staphylococcus aureus strain TPS5614     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 378401..389246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC25_RS01645 (TPS5614TP_03240) - 378669..380510 (-) 1842 WP_000077323.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  LPC25_RS01650 (TPS5614TP_03250) metC 380479..381639 (-) 1161 WP_000175842.1 cystathionine beta-lyase MetC -
  LPC25_RS01655 (TPS5614TP_03260) - 381636..382739 (-) 1104 WP_000655698.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  LPC25_RS01660 (TPS5614TP_03270) spo0J 383401..384246 (+) 846 WP_101244956.1 ParB/RepB/Spo0J family partition protein Regulator
  LPC25_RS01665 (TPS5614TP_03280) - 384400..385281 (+) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  LPC25_RS01670 (TPS5614TP_03290) - 385311..385514 (+) 204 WP_000157348.1 DUF951 domain-containing protein -
  LPC25_RS01675 (TPS5614TP_03300) ychF 385526..386623 (+) 1098 WP_001218728.1 redox-regulated ATPase YchF -
  LPC25_RS01680 (TPS5614TP_03310) - 386709..386900 (-) 192 WP_001052483.1 hypothetical protein -
  LPC25_RS01685 (TPS5614TP_03320) rpsF 387145..387441 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  LPC25_RS01690 (TPS5614TP_03330) ssbA 387462..387965 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  LPC25_RS01695 (TPS5614TP_03340) rpsR 388017..388259 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32831.84 Da        Isoelectric Point: 9.9795

>NTDB_id=76475 LPC25_RS01660 WP_101244956.1 383401..384246(+) (spo0J) [Staphylococcus aureus strain TPS5614]
MSELSKSEDQRITKTKYEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KIADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKENWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=76475 LPC25_RS01660 WP_101244956.1 383401..384246(+) (spo0J) [Staphylococcus aureus strain TPS5614]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAATATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTCTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
AGAAAATTTACAACGAGAAGACTTAAATGCGATTGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTGCCGAAA
AAGATTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAATTGGAGTGTCAGATATTTAGAAAACCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.996

92.883

0.381

Multiple sequence alignment