Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   O0R49_RS12455 Genome accession   NZ_CP114177
Coordinates   2399583..2400353 (-) Length   256 a.a.
NCBI ID   WP_095409043.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2394583..2405353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS12435 (O0R49_12435) - 2394676..2395497 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  O0R49_RS12440 (O0R49_12440) - 2395523..2396161 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  O0R49_RS12445 (O0R49_12445) glyS 2396329..2398374 (-) 2046 WP_144484662.1 glycine--tRNA ligase subunit beta -
  O0R49_RS12450 (O0R49_12450) glyQ 2398367..2399254 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  O0R49_RS12455 (O0R49_12455) recO 2399583..2400353 (-) 771 WP_095409043.1 DNA repair protein RecO Machinery gene
  O0R49_RS12460 (O0R49_12460) - 2400389..2400532 (-) 144 WP_003217288.1 YqzL family protein -
  O0R49_RS12465 (O0R49_12465) era 2400681..2401586 (-) 906 WP_007501305.1 GTPase Era -
  O0R49_RS12470 (O0R49_12470) - 2401579..2401977 (-) 399 WP_008356263.1 cytidine deaminase -
  O0R49_RS12475 (O0R49_12475) - 2402091..2402477 (-) 387 WP_048238914.1 diacylglycerol kinase family protein -
  O0R49_RS12480 (O0R49_12480) ybeY 2402455..2402934 (-) 480 WP_061408615.1 rRNA maturation RNase YbeY -
  O0R49_RS12485 (O0R49_12485) - 2402935..2405046 (-) 2112 WP_391509730.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29288.93 Da        Isoelectric Point: 8.1204

>NTDB_id=764718 O0R49_RS12455 WP_095409043.1 2399583..2400353(-) (recO) [Bacillus safensis strain PLA 1006]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=764718 O0R49_RS12455 WP_095409043.1 2399583..2400353(-) (recO) [Bacillus safensis strain PLA 1006]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCTATAAGCCAGCCGTTTT
TATACGGCACATTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGACC
ATTCGGGAAGACTTATTTCTGACCGCTTATGCTGCATATATGACGGAATTACTTGATAAAGGAACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGATTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCTGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTCGATGTGAAGCCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCATTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754