Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   O0R49_RS12120 Genome accession   NZ_CP114177
Coordinates   2342843..2343178 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2337843..2348178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS12100 (O0R49_12100) gcvT 2338321..2339418 (-) 1098 WP_095408992.1 glycine cleavage system aminomethyltransferase GcvT -
  O0R49_RS12105 (O0R49_12105) - 2339980..2341650 (+) 1671 WP_269195345.1 DEAD/DEAH box helicase -
  O0R49_RS12110 (O0R49_12110) - 2341665..2342462 (+) 798 WP_269195346.1 YqhG family protein -
  O0R49_RS12115 (O0R49_12115) - 2342645..2342809 (+) 165 WP_095408995.1 anti-repressor SinI family protein -
  O0R49_RS12120 (O0R49_12120) sinR 2342843..2343178 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  O0R49_RS12125 (O0R49_12125) tasA 2343246..2344046 (-) 801 WP_111292280.1 biofilm matrix protein TasA -
  O0R49_RS12130 (O0R49_12130) sipW 2344101..2344673 (-) 573 WP_269195347.1 signal peptidase I SipW -
  O0R49_RS12135 (O0R49_12135) tapA 2344726..2345253 (-) 528 WP_269195348.1 amyloid fiber anchoring/assembly protein TapA -
  O0R49_RS12140 (O0R49_12140) - 2345553..2345831 (+) 279 WP_223251017.1 DUF3889 domain-containing protein -
  O0R49_RS12145 (O0R49_12145) - 2345865..2346062 (-) 198 WP_095409000.1 YqzE family protein -
  O0R49_RS12150 (O0R49_12150) - 2346122..2346505 (-) 384 WP_269195349.1 competence type IV pilus minor pilin ComGG -
  O0R49_RS12155 (O0R49_12155) comGF 2346502..2347029 (-) 528 WP_186437312.1 competence type IV pilus minor pilin ComGF -
  O0R49_RS12160 (O0R49_12160) comGE 2346941..2347255 (-) 315 WP_144484624.1 competence type IV pilus minor pilin ComGE -
  O0R49_RS12165 (O0R49_12165) comGD 2347239..2347685 (-) 447 WP_197198255.1 competence type IV pilus minor pilin ComGD -
  O0R49_RS12170 (O0R49_12170) comGC 2347678..2347971 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=764715 O0R49_RS12120 WP_024422969.1 2342843..2343178(+) (sinR) [Bacillus safensis strain PLA 1006]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=764715 O0R49_RS12120 WP_024422969.1 2342843..2343178(+) (sinR) [Bacillus safensis strain PLA 1006]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946