Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   O0R49_RS11935 Genome accession   NZ_CP114177
Coordinates   2310675..2312408 (-) Length   577 a.a.
NCBI ID   WP_269195339.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2305675..2317408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS11920 (O0R49_11920) - 2306552..2307652 (-) 1101 WP_144484601.1 Rap family tetratricopeptide repeat protein -
  O0R49_RS11925 (O0R49_11925) spo0A 2308109..2308912 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  O0R49_RS11930 (O0R49_11930) spoIVB 2309198..2310475 (-) 1278 WP_048239243.1 SpoIVB peptidase -
  O0R49_RS11935 (O0R49_11935) recN 2310675..2312408 (-) 1734 WP_269195339.1 DNA repair protein RecN Machinery gene
  O0R49_RS11940 (O0R49_11940) ahrC 2312442..2312891 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  O0R49_RS11945 (O0R49_11945) - 2313057..2313911 (-) 855 WP_095408976.1 TlyA family RNA methyltransferase -
  O0R49_RS11950 (O0R49_11950) dxs 2313908..2315809 (-) 1902 WP_111292271.1 1-deoxy-D-xylulose-5-phosphate synthase -
  O0R49_RS11955 (O0R49_11955) - 2315960..2316856 (-) 897 WP_206762064.1 polyprenyl synthetase family protein -
  O0R49_RS11960 (O0R49_11960) - 2316840..2317100 (-) 261 WP_269195340.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64676.47 Da        Isoelectric Point: 4.7748

>NTDB_id=764714 O0R49_RS11935 WP_269195339.1 2310675..2312408(-) (recN) [Bacillus safensis strain PLA 1006]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISILREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEISPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSAFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIHKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLNQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=764714 O0R49_RS11935 WP_269195339.1 2310675..2312408(-) (recN) [Bacillus safensis strain PLA 1006]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACGGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCTTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTTTGC
GAAGAGCAAGGAATTGATGCGTCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
TATTAATGGAAAGCTTGTCACCATCTCAATTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTTGATCAATTTGGGGCAGAAGAAATTTCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTAAGGCAGCTGTCTGAGAACGAGCAGGAAATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCGCAATTAGAGCCAGGAGAAGATGAGAGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTTCAAAACGCGTATAACGCCTTGCGTAATGAA
CAAGGAGGACTTGATTGGGTTGGCATGTCCTCAAGCGAGCTTGAGCAGGTGTCTGAGATCAACGATGATTTGAAGAAGCT
ATCCGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACCTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTCCAGACGCT
CAAAAATAAACTGGATGCGATGAGTCGTGATGCTCTGCTTGAAGCACTTAATGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCCAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCAGCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCTTTTGGCAGCACAGATTGTCCGCTTTTAGACGGAAAACCTGTCCAGCTCGGAAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCCGGAGGAGAAATCTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTTGATGAGGTTGATACAGGC
GTCAGCGGCAGAGTCGCACAAGCCATTGCCGAAAAAATTCACAAAGTAGCGTCTGGGTCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCAGCAATGGCTGACACACATCTTTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACAGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGAACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

76.083

100

0.761