Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   O0R49_RS09245 Genome accession   NZ_CP114177
Coordinates   1802037..1802417 (+) Length   126 a.a.
NCBI ID   WP_044335941.1    Uniprot ID   A0AAP7UKB4
Organism   Bacillus safensis strain PLA 1006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1797037..1807417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS09235 (O0R49_09235) - 1797561..1800704 (+) 3144 WP_269196391.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  O0R49_RS09240 (O0R49_09240) - 1800899..1801807 (+) 909 WP_039178896.1 trypsin-like serine peptidase -
  O0R49_RS09245 (O0R49_09245) nucA/comI 1802037..1802417 (+) 381 WP_044335941.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  O0R49_RS09250 (O0R49_09250) - 1802564..1803412 (+) 849 WP_095408608.1 STAS domain-containing protein -
  O0R49_RS09255 (O0R49_09255) - 1803444..1803986 (-) 543 WP_095408609.1 IseA DL-endopeptidase inhibitor family protein -
  O0R49_RS09260 (O0R49_09260) - 1804285..1804725 (+) 441 WP_269196392.1 hypothetical protein -
  O0R49_RS09265 (O0R49_09265) lexA 1804773..1805393 (-) 621 WP_034283422.1 transcriptional repressor LexA -
  O0R49_RS09270 (O0R49_09270) yneA 1805553..1805864 (+) 312 WP_024425130.1 cell division suppressor protein YneA -
  O0R49_RS09275 (O0R49_09275) - 1805882..1806529 (+) 648 WP_073979991.1 recombinase family protein -
  O0R49_RS09280 (O0R49_09280) - 1806599..1806829 (+) 231 WP_048240230.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13727.41 Da        Isoelectric Point: 8.5068

>NTDB_id=764711 O0R49_RS09245 WP_044335941.1 1802037..1802417(+) (nucA/comI) [Bacillus safensis strain PLA 1006]
MGTLLGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=764711 O0R49_RS09245 WP_044335941.1 1802037..1802417(+) (nucA/comI) [Bacillus safensis strain PLA 1006]
ATGGGCACGTTGTTAGGTGGATTTGGAGAGAAGCAGGCAGCAAAAGGTGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCG
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGCGTTCAATATGTCAGTCCATCTGATAATAGGGGAGCAGGCTCATG
GGTCGGCCATCAAATCAGCGGGTTTCCTGATGGAAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.983

94.444

0.548