Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   TthTMY_RS11630 Genome accession   NZ_AP025158
Coordinates   2147287..2148096 (-) Length   269 a.a.
NCBI ID   WP_096411362.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2142287..2153096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS11600 (TthTMY_23020) rsmI 2142330..2143124 (-) 795 WP_096411356.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  TthTMY_RS11605 (TthTMY_23030) - 2143126..2143620 (-) 495 WP_096411357.1 hypothetical protein -
  TthTMY_RS11610 (TthTMY_23040) - 2143784..2144311 (-) 528 WP_096411358.1 inorganic diphosphatase -
  TthTMY_RS11615 (TthTMY_23050) - 2144344..2144988 (+) 645 WP_096411359.1 YcxB family protein -
  TthTMY_RS11620 comEA 2144961..2145269 (+) 309 WP_172844695.1 ComEA family DNA-binding protein Machinery gene
  TthTMY_RS11625 (TthTMY_23070) comA/comEC 2145266..2147299 (+) 2034 WP_096411361.1 ComEC/Rec2 family competence protein Machinery gene
  TthTMY_RS11630 (TthTMY_23080) spo0J 2147287..2148096 (-) 810 WP_096411362.1 ParB/RepB/Spo0J family partition protein Regulator
  TthTMY_RS11635 (TthTMY_23090) soj 2148080..2148829 (-) 750 WP_096411363.1 chromosome-partitioning ATPase Soj -
  TthTMY_RS11640 (TthTMY_23100) rsmG 2148823..2149572 (-) 750 WP_096411364.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29830.70 Da        Isoelectric Point: 10.1529

>NTDB_id=76471 TthTMY_RS11630 WP_096411362.1 2147287..2148096(-) (spo0J) [Thermus thermophilus strain TMY]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITPGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMASRRPPEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=76471 TthTMY_RS11630 WP_096411362.1 2147287..2148096(-) (spo0J) [Thermus thermophilus strain TMY]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAAGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAAAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTTCCTGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
TGCCCTGGTGGAGAACCTTCAGCGGGAGGACCTCTCTCCCGTGGAGGAGGCCCGGGGCTACCAAGCCCTTTTGGAAATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTTAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCCCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTTTGGGGGCTCAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTTAGGGAGCGCCTGG
CCATGGCCTCCAGGCGCCCTCCCGAGCCCTCGCCCCTTTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGCGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(26-112)

HTH domain found in ParB protein (HTH_ParB)

(162-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.6

92.937

0.387

Multiple sequence alignment