Detailed information    

insolico Bioinformatically predicted

Overview


Name   addA   Type   Machinery gene
Locus tag   O0R49_RS05520 Genome accession   NZ_CP114177
Coordinates   1073943..1077647 (+) Length   1234 a.a.
NCBI ID   WP_269196197.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1068943..1082647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS05505 (O0R49_05505) - 1069248..1069658 (+) 411 WP_025093362.1 DoxX family protein -
  O0R49_RS05510 (O0R49_05510) - 1069856..1070302 (-) 447 WP_269196195.1 ferritin-like domain-containing protein -
  O0R49_RS05515 (O0R49_05515) addB 1070456..1073965 (+) 3510 WP_269196196.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  O0R49_RS05520 (O0R49_05520) addA 1073943..1077647 (+) 3705 WP_269196197.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  O0R49_RS05525 (O0R49_05525) sbcD 1077674..1078849 (+) 1176 WP_144470097.1 exonuclease subunit SbcD -
  O0R49_RS05530 (O0R49_05530) - 1078846..1082241 (+) 3396 WP_269196198.1 AAA family ATPase -
  O0R49_RS05535 (O0R49_05535) - 1082261..1082560 (+) 300 WP_039177660.1 hypothetical protein -

Sequence


Protein


Download         Length: 1234 a.a.        Molecular weight: 142337.58 Da        Isoelectric Point: 5.0867

>NTDB_id=764695 O0R49_RS05520 WP_269196197.1 1073943..1077647(+) (addA) [Bacillus safensis strain PLA 1006]
MQIPKPNNSTWTDDQWEAIVSEGQDILVAAAAGSGKTAVLVERLIRKMTRPEDPVDVDRLLVVTFTNASAAEMKHRITEA
LEKELAKNPGSLHMRRQLSLMNRANISTLHSFCLQVLRTFYYEIDLDPGFRLADQTEGELLGDEVLDELFEDEYKAGKPA
FFELVDRYTSDRHDLDLQWLVKRIYEFSRSHPSPEQWMRAFLSLYDVDAQTKVEQLPFYPYIKEDLSLVFRSCLELLERA
LALSKEPGGPAPRAENFIDDLEQVNELIRHQDDFEKLYELLPNINFKRLKTCKGDEYDPVLLEKATDARNQAKKQLEKLK
DEYFMRSPAQHLKSLAEMKPVVETLVELVIQFGQRFERAKQEKSIVDFSDLEHYCLRILAEQDVEGNLIETEAAKYYQQQ
FEEVLVDEYQDTNLVQETILKLVSKGEHAAEGNLFMVGDVKQSIYRFRLAEPMLFLNKYKQFKPDGKETGKRIDLNKNFR
SRSDVLDSTNFLFKQLMGETVGEIEYDEQAELKLGASYPESKDTTTEMLLVHLDQQEAETDEEREELETVQLEARVIAKK
IRELVEQPFQVYDAKQQMTRNLQYRDIVILLRSMPWAPQMMEELKKQGIPVYANLSSGYFEATEVSVILSLLKVIDNPYQ
DIPLAAVLRSPIVHLDENEMALIRTSDKKGTYYDAVKAFMSVTHSDHPTCKKLERFFRLLRKWRDFSMNHSVAELIWEVY
RDTQYLDYVGGMPGGKQRQANLRALYDRAKQYEKAAFRGLFRFLRFIERMQERGDDLGAAKTFSETEDVVRMMTIHSSKG
LEFPIVFTAGLGRNFNMMDLNQSYLLDKELGFGSKYIHPELRISYATLPLVAMKKKMRKELLSEELRVLYVALTRAKEKL
FLVGSVKNQVKALSKWQNAATGEDWLIPDFERYQSKTYLDFIGPALIRHQAMSSILEETGNVVLSHPSVFTISFTQASDL
LKEDMSLEKKQQDEVVQALMDGLPVEGYGDADEKVAERLSWRYPYLAASQVGTKQSVSEIKRMKEIQDEYSVPSSLRKAR
TTLYDRPAFMKKKALTAAEQGTAMHTVMQHIPLPSDVLYDDSRIQQLLDSLQQRDLLTNEQVQSIDQEGITAFFSTSIGQ
KLQKADWVKREVSFSMVLPVKEVYSHIDAEGEPVLIQGMIDCLFETDGKLYLLDYKTDRVQGRYTGGLEAAAPILKKRYE
TQIALYAKAVERLTNRTLEEKILYFFDGNLEISL

Nucleotide


Download         Length: 3705 bp        

>NTDB_id=764695 O0R49_RS05520 WP_269196197.1 1073943..1077647(+) (addA) [Bacillus safensis strain PLA 1006]
ATGCAAATACCAAAACCGAATAACAGTACTTGGACGGATGACCAGTGGGAAGCCATCGTTTCAGAAGGACAAGATATCCT
TGTTGCGGCGGCGGCAGGGTCAGGTAAAACAGCTGTTTTGGTTGAACGGCTGATTCGAAAAATGACCCGTCCTGAAGATC
CAGTTGATGTGGATCGTCTGCTCGTTGTGACTTTCACAAATGCATCTGCGGCAGAGATGAAACATCGGATCACAGAAGCA
CTTGAAAAGGAATTAGCCAAAAACCCCGGGTCCCTTCATATGAGAAGACAGCTGTCACTCATGAATCGTGCCAATATTTC
TACCTTGCACTCTTTTTGCTTACAGGTGCTGCGCACCTTTTACTATGAGATTGACCTTGATCCAGGCTTTCGTTTGGCTG
ATCAAACAGAAGGAGAATTATTAGGAGATGAAGTGTTAGATGAACTGTTTGAGGATGAATATAAGGCTGGAAAGCCAGCG
TTCTTTGAACTGGTTGATCGTTACACTTCTGACCGTCATGATTTAGACTTGCAATGGCTTGTGAAGAGAATTTATGAGTT
TTCCAGATCTCACCCCTCACCTGAGCAATGGATGAGGGCATTCCTTTCTCTTTATGATGTAGATGCTCAAACAAAAGTAG
AACAATTACCGTTTTATCCATATATCAAAGAGGATCTTTCTCTCGTTTTTAGAAGCTGTCTGGAACTGCTCGAACGAGCT
CTCGCTCTATCAAAAGAACCGGGCGGTCCAGCACCGAGAGCGGAAAATTTTATAGATGATTTAGAGCAAGTCAATGAATT
GATCAGGCATCAAGATGATTTTGAGAAGCTTTACGAGCTTTTGCCAAACATCAATTTTAAAAGGCTCAAAACATGTAAAG
GGGACGAATATGACCCTGTACTGTTAGAAAAAGCTACAGATGCACGCAATCAAGCAAAAAAACAATTAGAAAAGCTCAAA
GATGAATACTTTATGCGAAGTCCCGCCCAGCATTTGAAAAGCTTAGCTGAAATGAAGCCAGTGGTCGAAACACTTGTGGA
GCTTGTCATCCAATTTGGACAGCGATTCGAAAGAGCGAAGCAAGAAAAATCAATCGTGGACTTTTCGGATTTAGAGCATT
ATTGCTTACGCATTTTAGCGGAGCAGGACGTGGAAGGCAATTTGATCGAAACAGAAGCGGCCAAGTACTATCAACAGCAG
TTTGAAGAAGTACTCGTTGATGAATACCAAGATACAAACCTTGTACAAGAAACGATTTTAAAGCTTGTATCTAAAGGGGA
ACATGCTGCAGAGGGCAACCTGTTTATGGTTGGTGATGTAAAGCAGTCTATTTATCGTTTTAGACTGGCTGAACCCATGC
TCTTTTTAAACAAATATAAACAATTTAAACCAGATGGCAAAGAAACAGGGAAGAGAATTGATTTAAATAAAAACTTCCGC
AGCCGTTCAGATGTGTTAGACAGTACAAACTTTTTGTTCAAACAGCTGATGGGGGAAACAGTTGGAGAAATTGAATATGA
TGAACAAGCTGAATTAAAGCTTGGAGCGAGTTATCCAGAAAGTAAAGATACAACGACAGAAATGCTCCTTGTTCATTTAG
ATCAACAGGAAGCAGAAACTGACGAAGAGCGGGAAGAACTAGAGACCGTACAGCTTGAAGCGAGAGTCATTGCTAAAAAA
ATAAGAGAATTGGTAGAGCAGCCATTTCAAGTGTACGATGCAAAACAGCAAATGACCCGTAATTTGCAGTATCGGGACAT
TGTGATTTTGCTCCGCTCTATGCCGTGGGCCCCGCAAATGATGGAGGAATTGAAGAAGCAGGGGATTCCTGTGTATGCGA
ATCTTTCCTCTGGTTATTTTGAAGCAACAGAGGTGTCTGTGATTCTTTCTCTGTTAAAAGTCATCGATAATCCATATCAG
GATATCCCGCTTGCAGCTGTATTAAGATCACCAATTGTTCATTTAGACGAAAATGAAATGGCACTGATCCGCACGAGTGA
TAAGAAAGGCACTTATTATGATGCTGTGAAAGCATTTATGAGTGTGACTCATTCAGATCACCCTACATGCAAAAAACTAG
AACGATTTTTCAGGTTGCTGCGTAAGTGGCGTGATTTCTCCATGAATCATTCAGTAGCGGAATTGATTTGGGAAGTATAC
CGCGATACGCAATATCTAGATTACGTTGGCGGGATGCCTGGAGGCAAGCAGAGACAGGCGAACCTCCGTGCTCTTTATGA
TCGAGCGAAGCAGTATGAAAAAGCTGCCTTTAGAGGGCTGTTCCGTTTTCTTCGCTTTATTGAAAGAATGCAGGAGCGTG
GAGATGATCTTGGTGCGGCAAAAACGTTCAGCGAAACAGAGGACGTTGTTCGCATGATGACGATCCACAGCAGTAAAGGA
TTAGAATTTCCAATCGTCTTTACCGCAGGACTCGGCAGGAACTTTAATATGATGGACTTAAACCAGTCTTACTTGCTTGA
TAAAGAATTAGGATTTGGAAGCAAATATATTCATCCAGAGCTGAGAATTAGTTATGCAACATTACCGCTTGTGGCGATGA
AAAAAAAGATGAGAAAAGAACTATTATCTGAAGAGCTGAGAGTTCTATATGTGGCGCTCACAAGGGCTAAGGAAAAATTA
TTTCTGGTCGGCTCTGTCAAAAATCAGGTGAAAGCATTAAGCAAATGGCAAAATGCTGCAACCGGAGAGGACTGGCTGAT
CCCTGATTTTGAACGTTATCAATCGAAAACATACTTAGATTTTATTGGTCCTGCTCTTATCCGTCACCAAGCGATGTCAT
CTATTTTAGAAGAAACAGGTAATGTCGTTCTGTCGCATCCATCAGTATTCACGATCTCATTTACTCAAGCTTCTGATCTT
CTAAAAGAAGATATGTCACTTGAAAAGAAGCAGCAAGATGAGGTGGTACAAGCATTGATGGACGGTCTGCCTGTTGAAGG
ATATGGTGATGCTGATGAGAAAGTAGCAGAGAGACTTTCATGGAGATATCCATATTTAGCGGCCTCACAAGTCGGTACAA
AGCAGTCTGTTTCTGAGATAAAAAGAATGAAAGAAATACAGGATGAGTACAGTGTTCCTTCTTCTCTTCGAAAAGCTCGT
ACAACGTTGTATGACCGTCCGGCTTTCATGAAGAAAAAAGCACTGACTGCTGCAGAGCAAGGCACCGCAATGCACACAGT
CATGCAGCATATTCCGCTTCCTTCTGATGTGCTCTATGATGATTCACGTATACAGCAACTGCTCGATTCCTTACAGCAGA
GAGACTTACTAACAAATGAACAAGTCCAGTCAATTGATCAAGAAGGAATTACAGCTTTCTTCTCTACTTCTATTGGTCAA
AAGCTGCAAAAAGCGGACTGGGTGAAACGAGAAGTGTCATTTAGTATGGTGTTACCTGTTAAAGAGGTATACAGCCATAT
TGATGCAGAAGGAGAGCCTGTCCTTATTCAAGGGATGATTGACTGTTTATTTGAAACGGACGGAAAGCTATATTTACTAG
ATTATAAAACCGATAGAGTGCAAGGCAGATATACAGGCGGCCTTGAAGCAGCTGCGCCTATTTTGAAAAAGCGCTATGAA
ACTCAAATAGCGTTATATGCAAAAGCAGTAGAACGTTTAACAAACAGAACATTAGAGGAGAAAATTCTTTATTTCTTTGA
CGGGAATTTAGAAATTTCTTTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

66.262

100

0.664