Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   O0R49_RS01985 Genome accession   NZ_CP114177
Coordinates   358703..359131 (-) Length   142 a.a.
NCBI ID   WP_269195942.1    Uniprot ID   -
Organism   Bacillus safensis strain PLA 1006     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 353703..364131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R49_RS01955 (O0R49_01955) - 353865..354194 (+) 330 WP_095407716.1 YckD family protein -
  O0R49_RS01960 (O0R49_01960) - 354238..355002 (-) 765 WP_095407696.1 MBL fold metallo-hydrolase -
  O0R49_RS01965 (O0R49_01965) - 355118..355534 (+) 417 WP_048238129.1 Lrp/AsnC family transcriptional regulator -
  O0R49_RS01970 (O0R49_01970) - 355563..356369 (+) 807 WP_144472859.1 aminoglycoside N(3)-acetyltransferase -
  O0R49_RS01975 (O0R49_01975) - 356371..356757 (-) 387 WP_269195941.1 competence protein ComJ -
  O0R49_RS01980 (O0R49_01980) - 356878..358575 (-) 1698 WP_095407700.1 methyl-accepting chemotaxis protein -
  O0R49_RS01985 (O0R49_01985) nucA/comI 358703..359131 (-) 429 WP_269195942.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  O0R49_RS01990 (O0R49_01990) - 359499..361568 (+) 2070 WP_269195943.1 hydantoinase/oxoprolinase family protein -
  O0R49_RS01995 (O0R49_01995) - 361558..363546 (+) 1989 WP_269195944.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15890.82 Da        Isoelectric Point: 5.9135

>NTDB_id=764688 O0R49_RS01985 WP_269195942.1 358703..359131(-) (nucA/comI) [Bacillus safensis strain PLA 1006]
MKLLKIILLFLLIVIGVATGYIKLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDQS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVSPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=764688 O0R49_RS01985 WP_269195942.1 358703..359131(-) (nucA/comI) [Bacillus safensis strain PLA 1006]
ATGAAACTTCTTAAAATCATTCTCTTGTTTTTATTAATTGTCATTGGTGTAGCAACAGGCTATATCAAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACCATTCACTTTCCTTCAGATCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGCACAATTGACCGTAAACATAGCGATGAGCAGAGAGATCAATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCAATGGCGATGTGTAAAGAAGGGGGCACAGGAGC
TTCTGTCAAATATGTAAGCCCTTCAGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAACTATCAGATGATCCTGATG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

71.698

74.648

0.535