Detailed information NTG0764678

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMY01_RS04975
• Genome accession: NZ_CP125883
• Coordinates: 1024476..1025468 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AHM9C61I
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1019476..1030468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY01_RS04945 (QMY01_04940)	ispD	1019537..1020247 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMY01_RS04950 (QMY01_04945)	ispF	1020247..1020726 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMY01_RS04955 (QMY01_04950)	truD	1020723..1021772 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QMY01_RS04960 (QMY01_04955)	surE	1021753..1022514 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QMY01_RS04965 (QMY01_04960)	pcm	1022508..1023134 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QMY01_RS04970 (QMY01_04965)	nlpD	1023319..1024413 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
QMY01_RS04975 (QMY01_04970)	rpoS	1024476..1025468 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QMY01_RS04980 (QMY01_04975)	ygbN	1025562..1026926 (-)	1365	WP_049254918.1	GntP family transporter	-
QMY01_RS04985 (QMY01_04980)	ygbM	1027015..1027791 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QMY01_RS04990 (QMY01_04985)	ygbL	1027796..1028434 (-)	639	WP_001278994.1	aldolase	-
QMY01_RS04995 (QMY01_04990)	otnK	1028431..1029693 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=764678 QMY01_RS04975 WP_000081550.1 1024476..1025468(+) (rpoS) [Escherichia coli strain AHM9C61I]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=764678 QMY01_RS04975 WP_000081550.1 1024476..1025468(+) (rpoS) [Escherichia coli strain AHM9C61I]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715