Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O2S85_RS02370 Genome accession   NZ_CP114176
Coordinates   444527..445480 (+) Length   317 a.a.
NCBI ID   WP_269411165.1    Uniprot ID   -
Organism   Lentibacillus daqui strain ZS110521     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439527..450480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2S85_RS02350 - 440392..440937 (-) 546 WP_269411161.1 HD domain-containing protein -
  O2S85_RS02355 fni 441152..442204 (+) 1053 WP_269411162.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  O2S85_RS02360 - 442542..443384 (+) 843 WP_269411163.1 MBL fold metallo-hydrolase -
  O2S85_RS02365 - 443491..444213 (+) 723 WP_269411164.1 DsbA family oxidoreductase -
  O2S85_RS02370 ceuB 444527..445480 (+) 954 WP_269411165.1 ABC transporter permease Machinery gene
  O2S85_RS02375 - 445470..446420 (+) 951 WP_269411166.1 iron chelate uptake ABC transporter family permease subunit -
  O2S85_RS02380 - 446414..447169 (+) 756 WP_269411167.1 ABC transporter ATP-binding protein -
  O2S85_RS02385 - 447212..448162 (+) 951 WP_269411168.1 siderophore ABC transporter substrate-binding protein -
  O2S85_RS02390 - 448385..449131 (+) 747 WP_269411169.1 SurA N-terminal domain-containing protein -
  O2S85_RS02395 - 449149..449340 (-) 192 WP_269411170.1 hypothetical protein -
  O2S85_RS02400 - 449331..449498 (+) 168 WP_269411171.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34813.05 Da        Isoelectric Point: 9.6841

>NTDB_id=764649 O2S85_RS02370 WP_269411165.1 444527..445480(+) (ceuB) [Lentibacillus daqui strain ZS110521]
MKVRYLAILVIILSVISVFVGVSDVSLLDIFSLTEDQKEVLVISRLPRLVSILIAGMSMSICGLIMQQLSKNKFVSPSTA
GTLDSARLGILVSMMIFTSATQLEKMLVSFAFALLGTLVFMKILEKVKFKDAIFIPLIGLMFGNIISSVSTFFAYQNNLI
QNMSSWMQGDFSMIMSGNYELMYVSIPILLIAAFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLIIVALVTASVVLSVGM
IPFLGLIIPNIVTIYQGDNLKKNLLHTALLGAIFVLVCDIIGRVIIYPYEIPISLTVGVIGSGVFIYLLVRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=764649 O2S85_RS02370 WP_269411165.1 444527..445480(+) (ceuB) [Lentibacillus daqui strain ZS110521]
ATGAAGGTACGGTATTTAGCTATATTGGTAATCATTCTTTCTGTTATTTCTGTGTTTGTCGGGGTTTCTGATGTTTCTCT
ACTCGACATATTCAGTCTGACAGAAGATCAAAAAGAGGTTTTGGTCATCAGCAGGCTCCCCAGGCTTGTTAGTATTTTAA
TAGCCGGGATGAGCATGAGTATATGCGGCTTGATTATGCAGCAACTGAGTAAAAATAAGTTTGTCTCCCCGTCAACCGCG
GGAACGCTTGACTCAGCGCGACTCGGTATCCTTGTCTCCATGATGATATTTACATCAGCAACTCAACTGGAGAAAATGCT
TGTATCGTTTGCCTTTGCATTGCTTGGTACACTTGTATTCATGAAGATTTTGGAGAAAGTGAAATTTAAGGATGCTATAT
TCATTCCATTGATTGGTTTAATGTTTGGAAATATTATTAGCTCTGTATCCACTTTTTTCGCTTATCAAAACAATCTAATC
CAGAATATGTCATCCTGGATGCAAGGCGACTTTTCGATGATTATGAGCGGAAATTATGAGTTGATGTATGTAAGTATTCC
AATTTTATTGATTGCTGCGTTTTACGCCAATAAATTTACGATTGCCGGAATGGGGGAGGACTTTTCCAAAAACTTAGGTC
TTAATTATCGCCAGGTGGTAAACCTTGGGCTGATCATTGTTGCCCTTGTTACAGCATCGGTCGTATTGTCAGTCGGTATG
ATTCCTTTTTTGGGATTAATCATTCCGAATATCGTTACCATTTATCAGGGAGATAATCTAAAAAAAAACTTATTACATAC
TGCATTGCTGGGGGCAATCTTTGTTTTAGTCTGCGATATCATTGGCAGGGTTATTATCTATCCTTATGAAATTCCAATTA
GTTTAACGGTTGGAGTGATAGGTAGCGGGGTATTTATCTATCTATTAGTAAGGAGAAAGAAATATGGATTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.165

99.685

0.53