Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OIX89_RS25485 Genome accession   NZ_CP114168
Coordinates   5264639..5265235 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain 2022CK-00565     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 5259639..5270235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIX89_RS25470 (OIX89_25470) helD 5259847..5261901 (-) 2055 WP_110242565.1 DNA helicase IV -
  OIX89_RS25475 (OIX89_25475) - 5262026..5262472 (+) 447 WP_012542294.1 YccF domain-containing protein -
  OIX89_RS25480 (OIX89_25480) yccS 5262490..5264625 (+) 2136 WP_008805895.1 YccS family putative transporter -
  OIX89_RS25485 (OIX89_25485) sxy/tfoX 5264639..5265235 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  OIX89_RS25490 (OIX89_25490) sulA 5265586..5266095 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  OIX89_RS25495 (OIX89_25495) ompA 5266448..5267500 (+) 1053 WP_008805892.1 porin OmpA -
  OIX89_RS25500 (OIX89_25500) matP 5267611..5268063 (-) 453 WP_012542298.1 macrodomain Ter protein MatP -
  OIX89_RS25505 (OIX89_25505) - 5268249..5270006 (+) 1758 WP_012968609.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=764633 OIX89_RS25485 WP_012542296.1 5264639..5265235(-) (sxy/tfoX) [Klebsiella variicola strain 2022CK-00565]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=764633 OIX89_RS25485 WP_012542296.1 5264639..5265235(-) (sxy/tfoX) [Klebsiella variicola strain 2022CK-00565]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505