Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N5B28_RS17080 Genome accession   NZ_CP114160
Coordinates   3491763..3492359 (-) Length   198 a.a.
NCBI ID   WP_130952941.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain 2022CK-00516     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3486763..3497359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5B28_RS17065 (N5B28_17065) helD 3486974..3489028 (-) 2055 WP_064158140.1 DNA helicase IV -
  N5B28_RS17070 (N5B28_17070) - 3489153..3489599 (+) 447 WP_004201437.1 YccF domain-containing protein -
  N5B28_RS17075 (N5B28_17075) yccS 3489617..3491752 (+) 2136 WP_044521942.1 YccS family putative transporter -
  N5B28_RS17080 (N5B28_17080) sxy/tfoX 3491763..3492359 (-) 597 WP_130952941.1 TfoX/Sxy family DNA transformation protein Regulator
  N5B28_RS17085 (N5B28_17085) - 3492377..3492682 (-) 306 WP_158239074.1 hypothetical protein -
  N5B28_RS17090 (N5B28_17090) sulA 3492708..3493217 (+) 510 WP_023289052.1 SOS-induced cell division inhibitor SulA -
  N5B28_RS17095 (N5B28_17095) ompA 3493570..3494640 (+) 1071 WP_044521956.1 porin OmpA -
  N5B28_RS17100 (N5B28_17100) matP 3494787..3495239 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  N5B28_RS17105 (N5B28_17105) - 3495425..3497182 (+) 1758 WP_101991842.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22617.30 Da        Isoelectric Point: 9.9016

>NTDB_id=764576 N5B28_RS17080 WP_130952941.1 3491763..3492359(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain 2022CK-00516]
MRKLVCPRLPQFQACVSPLGQLHSRPLFGGYSLAIEDTVFAMVAEGNIYLKACEQSAAYRVEHHNPLLMLRRHGRIVPLK
YYQIDDALWRDEKQLFRLSLMSWQSAQREKYCRRSSGRLKDLPNISFHMELQLIHSGIPDVLALREVGARQAWLKLRENN
ASLSHNVLLALEGAIVGVHAAALPTPRRQELLEWASAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=764576 N5B28_RS17080 WP_130952941.1 3491763..3492359(-) (sxy/tfoX) [Klebsiella quasipneumoniae strain 2022CK-00516]
ATGAGAAAACTCGTATGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCTCCGCTGGGTCAACTTCACTCTCGTCCCCT
GTTTGGCGGCTACAGCCTGGCTATCGAAGATACCGTGTTTGCGATGGTGGCAGAGGGGAATATTTATCTAAAGGCCTGCG
AGCAGAGCGCTGCCTATCGGGTAGAACACCATAATCCTTTATTGATGCTGCGCCGACACGGGCGCATCGTGCCGCTAAAG
TATTATCAAATCGACGATGCCTTGTGGCGCGATGAGAAACAGCTTTTCCGCTTGTCACTGATGTCGTGGCAGAGCGCCCA
GCGTGAAAAATATTGCCGCCGGTCGTCGGGACGCCTGAAGGATTTACCCAATATCAGTTTTCATATGGAATTGCAGCTGA
TTCACTCGGGCATACCAGACGTGTTAGCACTACGGGAGGTGGGCGCCCGCCAGGCCTGGCTAAAGCTGCGCGAGAACAAT
GCTTCCCTATCGCACAACGTCTTGCTGGCGCTGGAGGGGGCTATCGTTGGCGTTCATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTGGAATGGGCGTCTGCGCGCTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

49.746

99.495

0.495