Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LZG51_RS15305 Genome accession   NZ_CP114128
Coordinates   3095530..3096159 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PE164     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090530..3101159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG51_RS15290 (LZG51_015230) helD 3090772..3092826 (-) 2055 WP_089553361.1 DNA helicase IV -
  LZG51_RS15295 (LZG51_015235) yccF 3092949..3093395 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LZG51_RS15300 (LZG51_015240) yccS 3093405..3095567 (+) 2163 WP_000875041.1 YccS family putative transporter -
  LZG51_RS15305 (LZG51_015245) sxy/tfoX 3095530..3096159 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LZG51_RS15310 (LZG51_015250) sulA 3096378..3096887 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  LZG51_RS15315 (LZG51_015255) ompA 3097244..3098299 (+) 1056 WP_000750414.1 porin OmpA -
  LZG51_RS15320 (LZG51_015260) matP 3098374..3098826 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LZG51_RS15325 (LZG51_015265) ycbZ 3099012..3100772 (+) 1761 WP_000156509.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=764462 LZG51_RS15305 WP_000839153.1 3095530..3096159(-) (sxy/tfoX) [Escherichia coli strain PE164]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=764462 LZG51_RS15305 WP_000839153.1 3095530..3096159(-) (sxy/tfoX) [Escherichia coli strain PE164]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGTTCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1