Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QM316_RS06815 Genome accession   NZ_CP125862
Coordinates   1335124..1336092 (-) Length   322 a.a.
NCBI ID   WP_001807234.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-02202-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1330124..1341092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM316_RS06790 (QM316_06785) murB 1330757..1331680 (+) 924 WP_000608442.1 UDP-N-acetylmuramate dehydrogenase -
  QM316_RS06795 (QM316_06790) - 1331698..1332012 (+) 315 WP_001127269.1 CHY zinc finger protein -
  QM316_RS06800 (QM316_06795) - 1332273..1333301 (-) 1029 WP_000754446.1 siderophore ABC transporter substrate-binding protein -
  QM316_RS06805 (QM316_06800) - 1333420..1334181 (-) 762 WP_000616870.1 ABC transporter ATP-binding protein -
  QM316_RS06810 (QM316_06805) - 1334178..1335134 (-) 957 WP_001245577.1 iron chelate uptake ABC transporter family permease subunit -
  QM316_RS06815 (QM316_06810) ceuB 1335124..1336092 (-) 969 WP_001807234.1 ABC transporter permease Machinery gene
  QM316_RS06820 (QM316_06815) - 1336131..1336286 (-) 156 WP_000499194.1 hypothetical protein -
  QM316_RS06825 (QM316_06820) nrdF 1336462..1337433 (-) 972 WP_000562498.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QM316_RS06830 (QM316_06825) nrdE 1337551..1339656 (-) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QM316_RS06835 (QM316_06830) nrdI 1339619..1340017 (-) 399 WP_000692523.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35453.99 Da        Isoelectric Point: 10.1194

>NTDB_id=764459 QM316_RS06815 WP_001807234.1 1335124..1336092(-) (ceuB) [Staphylococcus aureus strain 18-02202-1]
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=764459 QM316_RS06815 WP_001807234.1 1335124..1336092(-) (ceuB) [Staphylococcus aureus strain 18-02202-1]
ATGAAGTATTTATTAAAGGGAAATATTTTGCTTCTATTACTAATATTGTTGACAATTATTTCGTTGTTCATAGGTGTGAG
TGAACTATCAATTAAAGATTTACTACATTTAACTGAGTCACAGCGGAATATTTTATTCTCAAGCCGAATACCAAGGACGA
TGAGTATTTTAATTGCTGGAAGTTCGTTGGCTTTAGCAGGCTTGATAATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCGACTACAGCTGGAACGATGGAATGGGCTAAACTAGGTATTTTAATTGCTTTATTGTTCTTTCCAACCGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGTATTTGCGGTACGTTTTTATTTGTTAAAATCATTGATTTTATAAAAGTGA
AAGATGTCATTTTTGTACCGCTTCTAGGAATTATGATGGGTGGGATTGTTGCAAGTTTCACGACCTTCATCTCATTGCGC
ACGAATGCTGTTCAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGCTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCTAATCATTTCACGATTGTAGGAATGGGTAAAGACTTTACTA
ATAATTTAGGTTTGAGTTACGAAAAATTAATTAACATCGCATTGTTTATTACTGCAACTATTACAGCATTGGTAGTGGTG
ACTGTTGGAACATTACCGTTCTTAGGACTAGTAATACCAAATATTATTTCGATTTATAGAGGTGATCATTTGAAAAATGC
TATCCCTCATACGATGATGTTAGGTGCCATCTTTGTATTATTTTCTGATATAGTTGGCAGAATTGTTGTTTATCCATATG
AAATAAATATTGGTTTAACAATAGGTGTATTTGGAACAATCATTTTCCTTATCTTGCTTATGAAAGGTAGGAAAAATTAT
GCGCAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.379

0.472