Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QM316_RS06730 Genome accession   NZ_CP125862
Coordinates   1318481..1319563 (-) Length   360 a.a.
NCBI ID   WP_000370982.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 18-02202-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1313481..1324563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM316_RS06710 (QM316_06705) - 1314096..1314194 (-) 99 Protein_1296 hypothetical protein -
  QM316_RS06715 (QM316_06710) secA 1314236..1316767 (-) 2532 WP_000506531.1 preprotein translocase subunit SecA -
  QM316_RS06720 (QM316_06715) raiA 1317181..1317753 (-) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  QM316_RS06725 (QM316_06720) - 1317814..1318488 (-) 675 WP_001057965.1 ComF family protein -
  QM316_RS06730 (QM316_06725) comFA 1318481..1319563 (-) 1083 WP_000370982.1 DEAD/DEAH box helicase Machinery gene
  QM316_RS06735 (QM316_06730) fakB1 1319927..1320793 (-) 867 WP_000686342.1 fatty acid kinase binding subunit FakB1 -
  QM316_RS06740 (QM316_06735) - 1320937..1321578 (+) 642 WP_000192947.1 YigZ family protein -
  QM316_RS06745 (QM316_06740) - 1321750..1322805 (-) 1056 WP_000258151.1 MraY family glycosyltransferase -
  QM316_RS06750 (QM316_06745) - 1323123..1324193 (+) 1071 WP_000460983.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41901.36 Da        Isoelectric Point: 9.5950

>NTDB_id=764458 QM316_RS06730 WP_000370982.1 1318481..1319563(-) (comFA) [Staphylococcus aureus strain 18-02202-1]
MDNVTRYKITESSQSASQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSSK
VEHATIYMTATPPKQLLSEIPNENIIKLSARFHKKSLPVPKYRYFKLNNNKIQKMLYRILQDQINNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYIHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMIQAKKEIQKMNKLALKRGCIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=764458 QM316_RS06730 WP_000370982.1 1318481..1319563(-) (comFA) [Staphylococcus aureus strain 18-02202-1]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTGCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAGCAGTCTTATGCCTCAGAACATATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGGCGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTGAAGTCATCTTCTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCAACGAAAATATAATTAA
ATTGTCAGCTCGCTTTCATAAAAAATCACTTCCAGTTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAATAATCAACGTTATACATTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACATTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATATCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TGGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGTCGAAAATTA
GAATGTCCTACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCAAGCAAAAAAAGAGATTCAAAA
GATGAACAAATTAGCATTAAAAAGAGGTTGTATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.663

95.556

0.369