NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	OZ428_RS29070	Genome accession	NZ_CP114115
Coordinates	6159199..6160566 (-)	Length	455 a.a.
NCBI ID	WP_016976768.1	Uniprot ID	A0A7Y8FX90
Organism	Pseudomonas sp. GXZC
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6154199..6165566

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OZ428_RS29050 (OZ428_29050)	yjiA	6155353..6156312 (-)	960	WP_269132068.1	GTPase	-
OZ428_RS29055 (OZ428_29055)	-	6156391..6156588 (-)	198	WP_033901562.1	YbdD/YjiX family protein	-
OZ428_RS29060 (OZ428_29060)	-	6156604..6158670 (-)	2067	WP_269132069.1	carbon starvation CstA family protein	-
OZ428_RS29065 (OZ428_29065)	-	6158845..6159210 (+)	366	WP_269132070.1	PilZ domain-containing protein	-
OZ428_RS29070 (OZ428_29070)	radA	6159199..6160566 (-)	1368	WP_016976768.1	DNA repair protein RadA	Machinery gene
OZ428_RS29075 (OZ428_29075)	-	6160602..6161141 (-)	540	WP_061434241.1	ankyrin repeat domain-containing protein	-
OZ428_RS29080 (OZ428_29080)	katB	6161200..6162729 (-)	1530	WP_218648210.1	catalase KatB	-
OZ428_RS29085 (OZ428_29085)	mscL	6163029..6163448 (+)	420	WP_010206685.1	large-conductance mechanosensitive channel protein MscL	-
OZ428_RS29090 (OZ428_29090)	-	6163494..6164270 (-)	777	WP_269132071.1	ferredoxin--NADP reductase	-
OZ428_RS29095 (OZ428_29095)	-	6164654..6165364 (+)	711	WP_269132072.1	autoinducer binding domain-containing protein	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48773.30 Da Isoelectric Point: 7.1317

                                >NTDB_id=764440 OZ428_RS29070 WP_016976768.1 6159199..6160566(-) (radA) [Pseudomonas sp. GXZC]

MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA

TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKESPPGIKIIGVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=764440 OZ428_RS29070 WP_016976768.1 6159199..6160566(-) (radA) [Pseudomonas sp. GXZC]

ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG

CGGTGCATGGAACACCCTGACTGAGACCATGATCGAGAGCGGTGGCGCCGCAGCTCCCACCGGCCGTGCCGGCTGGACCG

GGCAACAGGCGCAGATCAAGACGCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGTGAATTG

GACCGGGTGCTGGGCGGCGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGCGACCCAGGCATCGGCAAATCGACGAT

CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTATGTCACCGGCGAGGAATCCCAACAACAAGTGG

CGATGCGCGCCCGTCGCCTGGGGCTGCCCCAGGATCAACTGCGGGTGATGACCGAGACCTGCATCGAAAGCATCATCGCC

ACGGCCCGTATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACCATTTTCACCGAGCAATTGCAGTCGGCGCC

GGGTGGCGTGTCCCAGGTGCGTGAAAGTGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACAGCGATCTTCCTGG

TCGGTCATGTGACCAAAGAGGGCGCACTGGCCGGGCCACGGGTGTTGGAGCACATGGTCGACACCGTGTTGTATTTTGAA

GGTGAGTCCGATGGCCGTCTGCGTTTGCTGCGGGCTGTGAAGAACCGTTTTGGCGCGGTCAACGAACTGGGCGTGTTCGC

CATGACGGACCGGGGGCTTAAAGAAGTCTCCAACCCTTCAGCGATTTTTCTCACTCGCGCCCAGGAAGAAGTCCCCGGCA

GCGTGGTGATGGCAACGTGGGAAGGCACCCGCCCGATGCTGGTGGAAGTGCAGGCGTTGGTGGATGACAGCCATCTGGCC

AACCCGCGCCGCGTGACGTTGGGCCTGGATCAGAACCGCCTGGCGATGTTGCTCGCCGTATTGCACCGTCACGGCGGCAT

CCCGACCCACGACCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTCAAGGTGCTGGAGACCGCATCCGACCTGGCGTTGA

TGGCGGCAGTCATGTCCAGCCTGCGTAACCGACCGTTGCCCCATGACTTGCTGGTGTTCGGTGAGGTGGGCCTGTCGGGC

GAGGTGCGTCCGGTGCCCAGCGGCCAGGAACGCTTGAAGGAAGCTGCCAAGCACGGCTTCAAACGCGCAATTGTGCCCAA

AGGCAATGCGCCGAAGGAGTCGCCGCCGGGGATAAAGATCATTGGCGTGACGCGGTTGGAACAGGCATTGGATGCACTAT

TCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7Y8FX90

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.672	100	0.499
radA	Streptococcus mitis SK321	46.93	100	0.47
radA	Streptococcus mitis NCTC 12261	46.711	100	0.468
radA	Streptococcus pneumoniae Rx1	46.711	100	0.468
radA	Streptococcus pneumoniae D39	46.711	100	0.468
radA	Streptococcus pneumoniae R6	46.711	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.711	100	0.468

Detailed information NTG0764440