Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   TthTMY_RS03740 Genome accession   NZ_AP025158
Coordinates   671854..672216 (-) Length   120 a.a.
NCBI ID   WP_096412593.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 666854..677216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS03715 (TthTMY_07310) - 667665..668321 (+) 657 WP_096412578.1 chromosome segregation protein ScpA -
  TthTMY_RS03720 (TthTMY_07320) - 668344..668901 (+) 558 WP_096412581.1 Uma2 family endonuclease -
  TthTMY_RS03725 (TthTMY_07330) - 669150..669692 (-) 543 WP_096412583.1 Uma2 family endonuclease -
  TthTMY_RS03730 (TthTMY_07340) - 669813..670325 (-) 513 WP_096412586.1 CorA family divalent cation transporter -
  TthTMY_RS03735 (TthTMY_07350) - 670402..671763 (-) 1362 WP_223903426.1 hypothetical protein -
  TthTMY_RS03740 (TthTMY_07360) pilV 671854..672216 (-) 363 WP_096412593.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  TthTMY_RS03745 (TthTMY_07370) - 672403..673500 (-) 1098 WP_096410480.1 IS4 family transposase -
  TthTMY_RS03750 (TthTMY_07380) - 673658..675160 (-) 1503 WP_096412596.1 pilus assembly PilX family protein -
  TthTMY_RS03755 (TthTMY_07390) - 675174..675884 (-) 711 WP_096412599.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  TthTMY_RS03760 (TthTMY_07400) - 675881..676207 (-) 327 WP_223903427.1 type IV pilus modification PilV family protein -
  TthTMY_RS03765 (TthTMY_07410) - 676239..676706 (-) 468 WP_096412604.1 GspH/FimT family protein -
  TthTMY_RS03770 (TthTMY_07420) pilA/pilA1 676711..676887 (-) 177 WP_223903428.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12814.49 Da        Isoelectric Point: 4.6894

>NTDB_id=76442 TthTMY_RS03740 WP_096412593.1 671854..672216(-) (pilV) [Thermus thermophilus strain TMY]
MRNAKGFTLIELLIVIAIIAILAAVLIPNVLNARKRAIESSAQAFARQVATWVAAADTAGTAPTNLNNADCNEQDWLTAE
GAPDTYPSSVEECKITYSSTDGRYTITVKSTTGNTFTAVY

Nucleotide


Download         Length: 363 bp        

>NTDB_id=76442 TthTMY_RS03740 WP_096412593.1 671854..672216(-) (pilV) [Thermus thermophilus strain TMY]
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCTGCGGTGCTGAT
CCCGAACGTCTTGAACGCCCGTAAGCGGGCCATTGAGTCTTCGGCGCAGGCCTTCGCCCGGCAGGTGGCCACCTGGGTGG
CGGCGGCGGACACCGCTGGCACCGCTCCAACCAACTTGAACAACGCTGATTGTAACGAGCAGGATTGGCTCACCGCCGAA
GGGGCTCCTGACACCTACCCGTCTAGCGTTGAGGAGTGCAAGATCACCTACAGCTCTACTGACGGGCGTTACACCATCAC
TGTGAAATCCACCACTGGCAACACATTCACCGCCGTCTATTAG

Domains

Predicted by InterProScan.

Pilin A4 (PilA4)

(39-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.316

97.5

0.383