Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   O0R52_RS12420 Genome accession   NZ_CP114066
Coordinates   2485231..2486961 (-) Length   576 a.a.
NCBI ID   WP_217827767.1    Uniprot ID   A0A9Q4HMK5
Organism   Bacillus halotolerans strain B13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2480231..2491961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS12400 (O0R52_12400) - 2480796..2480930 (+) 135 WP_024122000.1 hypothetical protein -
  O0R52_RS12405 (O0R52_12405) - 2481003..2482121 (+) 1119 WP_044154650.1 NADH-dependent flavin oxidoreductase -
  O0R52_RS12410 (O0R52_12410) spo0A 2482701..2483504 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  O0R52_RS12415 (O0R52_12415) spoIVB 2483779..2485056 (-) 1278 WP_059352386.1 SpoIVB peptidase -
  O0R52_RS12420 (O0R52_12420) recN 2485231..2486961 (-) 1731 WP_217827767.1 DNA repair protein RecN Machinery gene
  O0R52_RS12425 (O0R52_12425) argR 2486997..2487446 (-) 450 WP_010334883.1 arginine repressor ArgR -
  O0R52_RS12430 (O0R52_12430) - 2487542..2488387 (-) 846 WP_044154647.1 TlyA family RNA methyltransferase -
  O0R52_RS12435 (O0R52_12435) dxs 2488384..2490285 (-) 1902 WP_269107236.1 1-deoxy-D-xylulose-5-phosphate synthase -
  O0R52_RS12440 (O0R52_12440) - 2490463..2491353 (-) 891 WP_227533979.1 polyprenyl synthetase family protein -
  O0R52_RS12445 (O0R52_12445) - 2491343..2491597 (-) 255 WP_024122010.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64704.51 Da        Isoelectric Point: 4.6801

>NTDB_id=764387 O0R52_RS12420 WP_217827767.1 2485231..2486961(-) (recN) [Bacillus halotolerans strain B13]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQELDSVGKDVAVEAANVSRIRKTWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RMATRGEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=764387 O0R52_RS12420 WP_217827767.1 2485231..2486961(-) (recN) [Bacillus halotolerans strain B13]
TTGTTAGCTGAATTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGCCATCCCGTTTTTGACGTTTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGCTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCAGCAAAGCTTGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGCAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAGCGCTTGAATTTTATTGAGACTCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCTGGATTCGGTTGGTAAAGATGTTGCAGTGGAAGCGGCAAACGTTTCCCGAATCCGAAAAACGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAATGGCGACCCGCGGTGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGCTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCTGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTAACCTCGATTATATTTGACGAGGTAGATACAGGCGTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTCGAAGTTACAGACTTGACGAAACGC
CATGCGAAAGAGCTGTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

95.66

100

0.957