Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QM317_RS11980 Genome accession   NZ_CP125861
Coordinates   2448753..2449493 (+) Length   246 a.a.
NCBI ID   WP_000216873.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 12-03119     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2443753..2454493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QM317_RS11955 (QM317_11940) yhaM 2444171..2445112 (+) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -
  QM317_RS11960 (QM317_11945) - 2445233..2446195 (-) 963 WP_000782121.1 foldase protein PrsA -
  QM317_RS11965 (QM317_11950) - 2446400..2446957 (-) 558 WP_000477953.1 DUF3267 domain-containing protein -
  QM317_RS11970 (QM317_11955) - 2447690..2448055 (-) 366 WP_000648118.1 YtxH domain-containing protein -
  QM317_RS11975 (QM317_11960) - 2448197..2448619 (-) 423 WP_000004981.1 HIT family protein -
  QM317_RS11980 (QM317_11965) pptA 2448753..2449493 (+) 741 WP_000216873.1 ABC transporter ATP-binding protein Regulator
  QM317_RS11985 (QM317_11970) - 2449486..2450709 (+) 1224 WP_000551840.1 ABC transporter permease -
  QM317_RS11990 (QM317_11975) traP 2450833..2451336 (-) 504 WP_000737976.1 signal transduction protein TRAP -
  QM317_RS11995 (QM317_11980) - 2451499..2451600 (+) 102 WP_031867559.1 hypothetical protein -
  QM317_RS12000 (QM317_11985) hemE 2451632..2452636 (+) 1005 WP_001815632.1 uroporphyrinogen decarboxylase -
  QM317_RS12005 (QM317_11990) hemH 2452694..2453617 (+) 924 WP_000162879.1 ferrochelatase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27701.09 Da        Isoelectric Point: 4.7455

>NTDB_id=764376 QM317_RS11980 WP_000216873.1 2448753..2449493(+) (pptA) [Staphylococcus aureus strain 12-03119]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHKQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=764376 QM317_RS11980 WP_000216873.1 2448753..2449493(+) (pptA) [Staphylococcus aureus strain 12-03119]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAAACAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545