Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   O0R52_RS05625 Genome accession   NZ_CP114066
Coordinates   1150132..1150710 (+) Length   192 a.a.
NCBI ID   WP_044156506.1    Uniprot ID   -
Organism   Bacillus halotolerans strain B13     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1145132..1155710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R52_RS22660 - 1145640..1146155 (-) 516 WP_369810943.1 methyl-accepting chemotaxis protein -
  O0R52_RS22665 - 1146447..1146821 (-) 375 Protein_1042 protoglobin domain-containing protein -
  O0R52_RS05610 (O0R52_05610) - 1147079..1148608 (-) 1530 WP_044156510.1 FAD-dependent oxidoreductase -
  O0R52_RS05615 (O0R52_05615) - 1148720..1149577 (+) 858 WP_059293097.1 SDR family oxidoreductase -
  O0R52_RS05620 (O0R52_05620) - 1149606..1149839 (-) 234 WP_044156508.1 IDEAL domain-containing protein -
  O0R52_RS05625 (O0R52_05625) comK 1150132..1150710 (+) 579 WP_044156506.1 competence transcription factor ComK Regulator
  O0R52_RS05630 (O0R52_05630) - 1150755..1151654 (-) 900 WP_044156505.1 SDR family oxidoreductase -
  O0R52_RS05635 (O0R52_05635) - 1151866..1152135 (+) 270 WP_044156503.1 excalibur calcium-binding domain-containing protein -
  O0R52_RS05640 (O0R52_05640) - 1152176..1153645 (-) 1470 WP_044156502.1 sodium:solute symporter family protein -
  O0R52_RS05645 (O0R52_05645) - 1153642..1153842 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  O0R52_RS05650 (O0R52_05650) - 1154067..1154429 (-) 363 WP_044156501.1 hypothetical protein -
  O0R52_RS05655 (O0R52_05655) - 1154585..1155205 (+) 621 WP_044156499.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22487.84 Da        Isoelectric Point: 8.0250

>NTDB_id=764365 O0R52_RS05625 WP_044156506.1 1150132..1150710(+) (comK) [Bacillus halotolerans strain B13]
MSQKTDTPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKKMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=764365 O0R52_RS05625 WP_044156506.1 1150132..1150710(+) (comK) [Bacillus halotolerans strain B13]
ATGAGTCAGAAAACTGACACACCATTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCAAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAAAGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.312

100

0.953