Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QMY43_RS14695 Genome accession   NZ_CP125856
Coordinates   3122919..3124754 (+) Length   611 a.a.
NCBI ID   WP_005458577.1    Uniprot ID   Q87KH0
Organism   Vibrio parahaemolyticus strain G855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3117919..3129754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS14675 (QMY43_14675) ggt 3118336..3120096 (-) 1761 WP_159403997.1 gamma-glutamyltransferase -
  QMY43_RS14680 (QMY43_14680) - 3120207..3120866 (-) 660 WP_024700229.1 LysE family translocator -
  QMY43_RS14685 (QMY43_14685) - 3120958..3121755 (-) 798 WP_021822348.1 AraC family transcriptional regulator -
  QMY43_RS14690 (QMY43_14690) rarD 3121830..3122744 (-) 915 WP_159403998.1 EamA family transporter RarD -
  QMY43_RS14695 (QMY43_14695) recQ 3122919..3124754 (+) 1836 WP_005458577.1 ATP-dependent DNA helicase RecQ Machinery gene
  QMY43_RS14700 (QMY43_14700) - 3124764..3125069 (+) 306 WP_005458579.1 DUF3630 family protein -
  QMY43_RS14705 (QMY43_14705) - 3125363..3126031 (+) 669 WP_005497391.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  QMY43_RS14710 (QMY43_14710) gppA 3126228..3127721 (-) 1494 WP_140289349.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  QMY43_RS14715 (QMY43_14715) rhlB 3127741..3129054 (-) 1314 WP_005458582.1 ATP-dependent RNA helicase RhlB -
  QMY43_RS14720 (QMY43_14720) trxA 3129166..3129492 (+) 327 WP_005458583.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69227.13 Da        Isoelectric Point: 6.8897

>NTDB_id=764305 QMY43_RS14695 WP_005458577.1 3122919..3124754(+) (recQ) [Vibrio parahaemolyticus strain G855]
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLKLVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHD
FRPEYAALGQLKQHFSHVPFMALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=764305 QMY43_RS14695 WP_005458577.1 3122919..3124754(+) (recQ) [Vibrio parahaemolyticus strain G855]
ATGACCTCAACTTTGTTAGCCGAACAATCAGACTCACCTGTAACGCCTCAACGTGTGTTGGAGGAAGTTTTCGGTTATCA
AACGTTTCGTGATGGCCAGCAAGAGGTCATCGAATCGGCGGTCGAGGGCAAAGACAGTCTGGTGATCATGCCGACAGGTG
GTGGCAAATCTCTTTGCTATCAGATACCTGCGTTGGTTCGTAGTGGCATCACCTTGGTGATTTCGCCGCTGATTTCTTTG
ATGAAAGACCAGGTCGATCAGCTCAAGGCTAACGGCGTTGCGGCAGAGTGTGTGAACTCCACCATGAGTCGTGAAGAGCT
GCTGAGTGTGTATAACCGCATGCACAGCGGTCAACTCAAATTGGTTTACGTCTCACCAGAACGCGTGTTAATGCGTGACT
TCATCGAGCGACTCGAAAACCTACCTTTGGCGATGATTGCGGTGGATGAAGCGCACTGTATCTCGCAGTGGGGGCACGAT
TTCCGTCCCGAATACGCCGCGCTGGGTCAGCTAAAGCAGCATTTTTCGCATGTGCCATTTATGGCGCTCACCGCCACTGC
GGATGACGCTACACGTCGCGACATTCTTGAACGCTTACGTTTGCATGAACCTCATGTCCACTTAGGCAGTTTTGACCGTC
CGAATATCCGCTACAACCTGGTCGAGAAGCACAAGCCGATTTCTCAGATCATTCGTTATCTCGACACCCAAAAGGGCAAT
TGCGGCATCATTTACTGTGGTAGCCGTAAGAAAGTCGAAATGGTGACGGAGAAGTTGTGCAACAACCACATCCGTGCGGC
GGGCTATCATGCAGGGATGGACGCTGATGAGCGTGCTTACGTTCAAGAGGCGTTTCAGCGTGATGACATTCAAATCGTGG
TCGCGACGGTTGCCTTTGGTATGGGTATCAACAAGCCGAACGTCCGTTTTGTGGTGCACTTTGATATTCCGCGCAATATT
GAATCCTACTACCAAGAAACGGGACGAGCAGGGCGAGATGGTTTGCCTGCTGAAGCGATGATGTTGTACGACCCTGCAGA
CATCAGTTGGCTACGTCGCATGCTGGATGAAAAAGACGATGGACCGCAAAAGCAAGTAGAAAGCCATAAACTTAATGCGA
TGAGTGCCTTTGCGGAAGCGCAAACCTGTCGTCGTCAGGTTCTGCTCAACTACTTTGGTGAATACCGCGAGAAGCCTTGT
GGTAACTGCGATATCTGCCTCGATCCACCCAAACATTTTGATGCGACAGAAGAAGCGCGAAAAGCGTTGTCGTGTGTTTA
CCGCGTTAACCAAAGCTTTGGTATGACGTATGTGGTTGAGGTGCTGCGTGGTATGCAAAATATCCGCGTGCGTGAACATG
GCCACGATAAGATCTCTACATACGGCATTGGCCGCGATCACAGCCATGATTACTGGGTGAGTATCTTCCGCCAGTTAATC
CACAAAGGTCTGCTGTTTCAAAACATTACTCGAAACTCGACGTTGCAACTGACCGAGGAAGCTCGACCATTATTGCGCGG
GGATGTGTCGCTCGAGCTAGCGGTTCCTCGTTTGGATACCGCAGCACGCGCTGCGAAGTCGGACAAACTGACCAGCAAAA
ACTACGATAAGAAGCTGTTTGCGAAATTACGCAAGCTGCGTAAGTCGATTGCCGATGAAGATGGCTTACCACCATACGTT
GTATTTAGTGATGCGACCTTGATTGATATGGCGGAGATTCTGCCGACGTCGTATGGCGAAATGCTGGCGGTGAGCGGGGT
AGGTCAACGTAAATTAGAAAAATATGCCGATCCATTCTTGGATCTGATTCAAGAACACATCACTCACCACGGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(228-333)

DEAD/DEAH box helicase (DEAD)

(31-189)

RQC domain (RQC)

(409-517)

HRDC domain (HRDC)

(537-603)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87KH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.541

96.89

0.393