Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QMY43_RS13375 Genome accession   NZ_CP125856
Coordinates   2839870..2840727 (-) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain G855     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2834870..2845727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS13350 (QMY43_13350) pyrE 2835841..2836482 (-) 642 WP_005458955.1 orotate phosphoribosyltransferase -
  QMY43_RS13355 (QMY43_13355) rph 2836587..2837303 (-) 717 WP_005459025.1 ribonuclease PH -
  QMY43_RS13360 (QMY43_13360) - 2837518..2838384 (+) 867 WP_005459003.1 YicC/YloC family endoribonuclease -
  QMY43_RS13365 (QMY43_13365) - 2838439..2838864 (-) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  QMY43_RS13370 (QMY43_13370) - 2838994..2839833 (-) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  QMY43_RS13375 (QMY43_13375) amiE 2839870..2840727 (-) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  QMY43_RS13380 (QMY43_13380) - 2840737..2842563 (-) 1827 WP_140103066.1 extracellular solute-binding protein -
  QMY43_RS13385 (QMY43_13385) - 2842602..2843645 (-) 1044 WP_015296095.1 ABC transporter permease subunit -
  QMY43_RS13390 (QMY43_13390) - 2843647..2844672 (-) 1026 WP_005458995.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=764295 QMY43_RS13375 WP_005496771.1 2839870..2840727(-) (amiE) [Vibrio parahaemolyticus strain G855]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=764295 QMY43_RS13375 WP_005496771.1 2839870..2840727(-) (amiE) [Vibrio parahaemolyticus strain G855]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGTGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCAA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTCAATGGTGAAGTTAATTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGCTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATACCCGCACAACCTATCT
GGTGGTATGCGTCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGACATTTTGATTTGTGATGAGCCAACGAC
AGCACTGGATGTAACGGTACAGGCGTCTATCCTTGAACTAATGAATGAACTTCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTCGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGATTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361