Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   TthTMY_RS02015 Genome accession   NZ_AP025158
Coordinates   339509..339976 (+) Length   155 a.a.
NCBI ID   WP_223903365.1    Uniprot ID   -
Organism   Thermus thermophilus strain TMY     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 334509..344976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TthTMY_RS01980 (TthTMY_03860) rnhA 335016..335516 (-) 501 WP_096411828.1 ribonuclease HI -
  TthTMY_RS01985 (TthTMY_03870) - 335513..335731 (-) 219 Protein_383 glyoxalase -
  TthTMY_RS01990 (TthTMY_03880) - 335733..336833 (-) 1101 WP_041444900.1 transposase -
  TthTMY_RS01995 - 336925..337095 (-) 171 Protein_385 VOC family protein -
  TthTMY_RS02000 (TthTMY_03900) - 337095..337382 (-) 288 WP_054647361.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  TthTMY_RS02005 (TthTMY_03910) - 337403..337966 (-) 564 WP_172844674.1 Uma2 family endonuclease -
  TthTMY_RS02010 (TthTMY_03920) guaA 337966..339477 (-) 1512 WP_223903364.1 glutamine-hydrolyzing GMP synthase -
  TthTMY_RS02015 (TthTMY_03930) luxS 339509..339976 (+) 468 WP_223903365.1 S-ribosylhomocysteine lyase Regulator
  TthTMY_RS02020 (TthTMY_03940) mtnN 339973..340635 (+) 663 WP_096411835.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  TthTMY_RS02025 (TthTMY_03950) - 340650..341573 (+) 924 WP_096411838.1 ribose-phosphate diphosphokinase -
  TthTMY_RS02030 (TthTMY_03960) uvrC 341631..343412 (-) 1782 WP_223903366.1 excinuclease ABC subunit UvrC -
  TthTMY_RS02035 (TthTMY_03970) - 343427..344389 (+) 963 WP_096411841.1 dipeptidase -
  TthTMY_RS02040 (TthTMY_03980) - 344363..344776 (-) 414 WP_096411845.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16919.47 Da        Isoelectric Point: 6.7534

>NTDB_id=76426 TthTMY_RS02015 WP_223903365.1 339509..339976(+) (luxS) [Thermus thermophilus strain TMY]
MAEVESFSLDHTRVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEERVLEAFVQALKDVLAHEGEVPGASFKECGNYRDHDLPGAKAWAEKVLKAGLRVQPTIPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76426 TthTMY_RS02015 WP_223903365.1 339509..339976(+) (luxS) [Thermus thermophilus strain TMY]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAGGGTCAAGGCCCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTCGCCCAGCCCAACCGGGAAGCCCTTCCCACGGGGGCCTTGCACA
CCCTCGAGCACCTCCTCGCGGGGTATTTGCGGGACCACCTCCCGGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAAGGCCCTGTGGGGGAGGAAAGGGTGCTGGAGGCCTTCGTCCAGGCCCTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTTAAGGAATGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAAAAGGTGCTGAAGGCAGGGCTTAGGGTGCAGCCCACCATTCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

42.208

99.355

0.419