Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QMY43_RS04245 Genome accession   NZ_CP125856
Coordinates   909721..911553 (+) Length   610 a.a.
NCBI ID   WP_283277386.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain G855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 904721..916553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY43_RS04230 (QMY43_04230) - 905448..906215 (+) 768 WP_140076474.1 nucleotidyltransferase domain-containing protein -
  QMY43_RS04235 (QMY43_04235) - 906212..908575 (-) 2364 WP_140076475.1 DNA polymerase II -
  QMY43_RS04240 (QMY43_04240) letA 909075..909719 (+) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QMY43_RS04245 (QMY43_04245) uvrC 909721..911553 (+) 1833 WP_283277386.1 excinuclease ABC subunit UvrC Machinery gene
  QMY43_RS04250 (QMY43_04250) pgsA 911600..912157 (+) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69308.55 Da        Isoelectric Point: 9.5525

>NTDB_id=764258 QMY43_RS04245 WP_283277386.1 909721..911553(+) (uvrC) [Vibrio parahaemolyticus strain G855]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNMLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSVLEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=764258 QMY43_RS04245 WP_283277386.1 909721..911553(+) (uvrC) [Vibrio parahaemolyticus strain G855]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTCATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTGCCGAAATATAACATGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGCGGTCATAAACATCCGAGATTGTCGATGCATCGTGGGGCCAAGAAGCGCAAAGGCGAGTATTTTGGTCCTTACCCTG
ACTCTGGGGCGGTACGAGAAACGCTGCACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGATACGGTTTACTCC
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGTTGCGCTGGCCCGTGTGTGAGCTCGATTATCTCAGATGAAGA
GTATGCAGAGCTGGTGGGTTTCGTCCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCAAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGACGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATCGCTTGTAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTACTACCTGAGCCACAATGAGGCGCGAACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCTATTCAAAAAGCACTGAGTGAAGTCGCAGGGCGTAAGGTTCATTTTCATAC
TTCTCCGACTGGTGCGAGAGGGAGATATCTTAAGCTGTCTAATACCAATGCACTTACGGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGTTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGCGAGAGCACTATCGCATCATGTGTGGTCTTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAACATTACTGGAATCACGGGTGGCGATGATTATGCAGCGATGGGGCAGGCGTTAGAGCGGCGCTACTCAA
AGCAGTTGGACGTAGAAAAAATCCCTGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCAAGTGATGCTCCAGCGCTACACTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGTGTGTTGGAGGGG
ATTGAAGGTGTTGGGCCAAAACGACGCCAAGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGCGCAAGTGT
TGAAGAAATCGCCAAAGTGCCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-238)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)

Helix-hairpin-helix domain (HHH_5)

(558-609)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.244

99.508

0.361