Detailed information NTG0764237

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMY43_RS01130
• Genome accession: NZ_CP125856
• Coordinates: 228399..229388 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain G855
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 223399..234388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMY43_RS01095 (QMY43_01095)	ftsB	223407..223688 (+)	282	WP_005455577.1	cell division protein FtsB	-
QMY43_RS01100 (QMY43_01100)	ispD	223690..224394 (+)	705	WP_140103986.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMY43_RS01105 (QMY43_01105)	ispF	224412..224888 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMY43_RS01110 (QMY43_01110)	truD	224935..225978 (+)	1044	WP_140103985.1	tRNA pseudouridine(13) synthase TruD	-
QMY43_RS01115 (QMY43_01115)	surE	225978..226754 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
QMY43_RS01120 (QMY43_01120)	-	226754..227380 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMY43_RS01125 (QMY43_01125)	-	227395..228318 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMY43_RS01130 (QMY43_01130)	rpoS	228399..229388 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QMY43_RS01135 (QMY43_01135)	mutS	229468..232053 (-)	2586	WP_159408075.1	DNA mismatch repair protein MutS	-
QMY43_RS01140 (QMY43_01140)	-	232226..233566 (+)	1341	WP_114867860.1	site-specific integrase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=764237 QMY43_RS01130 WP_005478537.1 228399..229388(+) (rpoS) [Vibrio parahaemolyticus strain G855]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=764237 QMY43_RS01130 WP_005478537.1 228399..229388(+) (rpoS) [Vibrio parahaemolyticus strain G855]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCTTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851