Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O0N60_RS14465 Genome accession   NZ_CP114039
Coordinates   3449154..3450515 (-) Length   453 a.a.
NCBI ID   WP_206799360.1    Uniprot ID   -
Organism   Corallococcus sp. NCRR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3444154..3455515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0N60_RS14445 (O0N60_14445) - 3444327..3444905 (+) 579 WP_206799367.1 NUDIX hydrolase -
  O0N60_RS14450 (O0N60_14450) - 3444912..3446393 (-) 1482 WP_206799365.1 HAMP domain-containing sensor histidine kinase -
  O0N60_RS14455 (O0N60_14455) - 3446634..3448352 (+) 1719 WP_206799363.1 hypothetical protein -
  O0N60_RS14460 (O0N60_14460) - 3448524..3449141 (+) 618 WP_206799361.1 hypothetical protein -
  O0N60_RS14465 (O0N60_14465) radA 3449154..3450515 (-) 1362 WP_206799360.1 DNA repair protein RadA Machinery gene
  O0N60_RS14470 (O0N60_14470) - 3450696..3450965 (+) 270 WP_120561896.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  O0N60_RS14475 (O0N60_14475) bioB 3451168..3452193 (+) 1026 WP_206799358.1 biotin synthase BioB -
  O0N60_RS14480 (O0N60_14480) bioF 3452190..3453359 (+) 1170 WP_206799356.1 8-amino-7-oxononanoate synthase -
  O0N60_RS14485 (O0N60_14485) bioD 3453349..3454044 (+) 696 WP_206799354.1 dethiobiotin synthase -
  O0N60_RS14490 (O0N60_14490) - 3454160..3454438 (+) 279 WP_120552248.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48029.24 Da        Isoelectric Point: 7.3489

>NTDB_id=764221 O0N60_RS14465 WP_206799360.1 3449154..3450515(-) (radA) [Corallococcus sp. NCRR]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGSSRPVKLQDVTGESEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLSRHGPVLYVSGEESLRQTKMRAERLRVESEAIHLFAETDADRVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRVEATKLQVVGVETLSEALAAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=764221 O0N60_RS14465 WP_206799360.1 3449154..3450515(-) (radA) [Corallococcus sp. NCRR]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCGTCCGGGGGCT
CCTCGCGGCCGGTGAAGCTGCAGGACGTGACGGGTGAGTCGGAAGTCCGCCGGCGCACGGGCATCACGGAGTTCGACCGC
GTGCTGGGCGGCGGCGTGGTGGGCGGCTCGCTGGTGCTGCTGGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTCCT
GGCGGCGCTGGACAAGCTGTCGCGGCACGGGCCGGTGCTCTACGTGTCGGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGAGCGAGGCCATCCACCTGTTCGCGGAGACGGACGCGGACCGGGTGCTCCAGGCGGCG
GAGGCGCTGAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGTTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGCC
ACGTGACGAAGGAGGGCTCCATCGCGGGTCCCCGGGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGGGGCCACCCGTTCCGGCTGTTGCGCGCGCACAAGAACCGCTTCGGCAGCACGAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCGCTGTTCCTCTCCGAGCGTCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACCCGTCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTACGGCACGGCG
AGGCGCACGGCGATCGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATTCCACT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGTTGAGTGAACCGGCGTGCGATTTGGCGGTGTGCGCCG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGTTGGACGCGAAGACGCTGGTGCTGGGAGAGGTGGGGCTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTCGCGGAAGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCGGCGGGCAG
CGCGCGGCGCGTGGAGGCGACGAAGCTCCAGGTGGTGGGCGTGGAGACCCTGAGCGAGGCGCTGGCGGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

AAA domain (AAA_25)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.434

99.779

0.523
  radA Streptococcus pneumoniae Rx1

52.097

100

0.521
  radA Streptococcus pneumoniae D39

52.097

100

0.521
  radA Streptococcus pneumoniae R6

52.097

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.097

100

0.521
  radA Streptococcus mitis NCTC 12261

52.097

100

0.521
  radA Streptococcus mitis SK321

51.876

100

0.519